AT3G02300.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 21089 Blast hits to 6160 proteins in 444 species: Archae - 90; Bacteria - 2769; Metazoa - 6703; Fungi - 1268; Plants - 2952; Viruses - 0; Other Eukaryotes - 7307 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:461551..463929 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50545.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 471 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDIGEIIGEV APSVSIPTKS AIYVWGYNQS GQTGRNEQEK LLRIPKQLPP ELFGCPAGAN SRWLDISCGR EHTAAVASDG SLFAWGANEY GQLGDGTEVG 101: RKHPKKVKQL QSEFVKFVSC GAFCTAAIAE PRENDGTLST SRLWVWGQNQ GSNLPRLFSG AFPATTAIRQ VSCGTAHVVA LSEEGLLQAW GYNEQGQLGR 201: GVTCEGLQAP RVINAYAKFL DEAPELVKIM QLSCGEYHTA ALSDAGEVYT WGLGSMGQLG HVSLQSGDKE LIPRRVVGLD GVSMKEVACG GVHTCALSLE 301: GALYAWGGGQ AGQLGLGPQS GFFFSVSNGS EMLLRNVPVL VIPTDVRLVA CGHSHTLVYM REGRICGWGY NSYGQAANEK SSYAWYPSPV DWCVGQVRKL 401: AAGGGHSAVL TDAFSLKELC EFQLADSVNL SNASEIQDVA FRMGSEALAR LCERLREQLL DGDFTNGEEV Y |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)