AT5G63780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.718 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
shoot apical meristem arrest 1 (SHA1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: maintenance of shoot apical meristem identity, meristem development; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G08750.2); Has 328 Blast hits to 324 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 327; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25525160..25526446 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40113.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKENQLETT NCGVNDHDCP PVKNEELAAE ARYSTDSDSG LPTCRVCHSA ESDRRGDTAL GFLGITPPVP EARKSNVDGT ADDVSKATES ELKNSVVKSN 101: GRESGFIELT SPDAEVFICT NDIEMGIQQH QDALLELGCS CKNELALVHY ACALKWFLNH GSTVCEICGH PAENIKTADF NKVVIALRDY TAIRERTADG 201: GDQIPVLPVN TDSTIDSDEV AVIRRQRLSE ITSWFGPHSL NNNNNNNSSV AAIPDQPLGV VNFDILPMEN RATKWAVEGT GILLATGLLT VTLVWLIAPR 301: VGKKTARSGL HILLGGLCAL TIVIFFRFVV LTRIRYGPAR YWAILFIFWF LVFGIWASRS NASHNSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)