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AT5G38510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rhomboid-related intramembrane serine protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 10 (TAIR:AT1G25290.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G38510-MONOMERBioCyc:ARA:GQT-1152-MONOMEREC:3.4.21.-eggNOG:COG0705
eggNOG:KOG2289EMBL:AB005231EMBL:AK226685EMBL:BT012562
EMBL:CP002688EnsemblPlants:AT5G38510EnsemblPlants:AT5G38510.1EnsemblPlants:AT5G38510.2
entrez:833839Gene3D:1.20.1540.10GeneID:833839Genevisible:Q9FFX0
GO:GO:0004252GO:GO:0016021GO:GO:0031969Gramene:AT5G38510.1
Gramene:AT5G38510.2hmmpanther:PTHR22936hmmpanther:PTHR22936:SF4HOGENOM:HOG000152445
InParanoid:Q9FFX0InterPro:IPR002610InterPro:IPR022764KEGG:ath:AT5G38510
OMA:PKVCRDYPANTHER:PTHR22936PaxDb:Q9FFX0Pfam:PF01694
PhylomeDB:Q9FFX0PRIDE:Q9FFX0PRO:PR:Q9FFX0ProteinModelPortal:Q9FFX0
Proteomes:UP000006548RefSeq:NP_001078681.1RefSeq:NP_198667.1STRING:3702.AT5G38510.1
SUPFAM:SSF144091TAIR:AT5G38510TMHMM:TMhelixUniGene:At.50493
UniProt:Q9FFX0
Coordinates (TAIR10) chr5:-:15417839..15420002
Molecular Weight (calculated) 47729.50 Da
IEP (calculated) 5.69
GRAVY (calculated) 0.02
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MALFPLHHEV PCKGEVLFDS NGLRRFSSGL KHRTMAEATT LGRDCRMKSY MKSIPYCRSP RRRLCLVRAS SENKITKQRL KLLDSYFGKL QNDDEKPSIS
101: TGDDIDRKAE LNVNEELDSL SAYLDKLQKD AKSKGLVSST LDVVKSEGGS VASKLRKTGI ENNNSPFQQF DDEDQAEDTL NFYAVSILAS INVGVCLFEA
201: AAPVRNNNMG LLSLPLLYGA KINDLILAGE WWRLVTPMFL HSGIPHVALS SWALLTFGPK VCRDYGLFTF CLIYILGGVS GNFMSFLHTA DPTVGGTGPA
301: FALIGAWLVD QNQNKEMIKS NEYEDLFQKA IIMTGFGLIL SHFGPIDDWT NLGALIAGIV YGFFTCPVLQ LGSGGSERQE GIVTVGPEKQ NSADPCKSFL
401: LFTIFVAVIV TSLLLIGDGP LDFPTYDDVV YSLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)