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AT3G18500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.724
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22363647 (2012): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1); Has 1180 Blast hits to 1142 proteins in 213 species: Archae - 0; Bacteria - 8; Metazoa - 512; Fungi - 213; Plants - 283; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G18500EnsemblPlants:AT3G18500.1entrez:821380hmmpanther:PTHR12121
hmmpanther:PTHR12121:SF41Pfam:PF03372
Coordinates (TAIR10) chr3:+:6352544..6355297
Molecular Weight (calculated) 47762.30 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.46
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MRCVNRVDCS WSRPSEAYRI LPSGGHLSSG FHQCPLSSLS FRSSFVCCSS STSGPSDSNP ESSSNRSYSR RWQNPLPRRQ HPDQIPSSQI ARDWIDSDTT
101: PVSQALERFT VVSYNILGDG NSSYHRELYS NVSVPYLKWG YRKRLICEEL IRLNPDIISM QRRTGDNVDG CAMFWKADRF GVLERENIEF SQFGMRDNVA
201: QLAVLELRKS NKSRKILLGN IHVLYNPNQG DVKLGQVRSL CSKAHLLSKK WGDIPIVLCG DFNSTPKSPL YNFLASSELN VMEHDKKELS GQKNCRPTKV
301: LETGSKSSNT ITFSFCSSWT KEEIRVATGQ ENSYWAAHPL KLNSSYASVK GSANTRDSVG EPLATSYHSK FLGTVDYLWY SDGLLPARVL DTLPIDVLCK
401: TKGLPCQELG SDHLALVSEF VFEPDG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)