suba logo
AT4G17360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Formyl transferase
Curator
Summary (TAIR10)
encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.
Computational
Description (TAIR10)
Formyl transferase; FUNCTIONS IN: methyltransferase activity, hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity; INVOLVED IN: tetrahydrofolate metabolic process, purine ribonucleotide biosynthetic process, biosynthetic process, photorespiration; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide formyltransferase, active site (InterPro:IPR001555), Formyltetrahydrofolate deformylase (InterPro:IPR004810), Formyl transferase, N-terminal (InterPro:IPR002376); BEST Arabidopsis thaliana protein match is: formyltetrahydrofolate deformylase, putative (TAIR:AT5G47435.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:3.5.1.10eggNOG:COG0788eggNOG:ENOG410IQK3EMBL:AL161546
EMBL:CP002687EMBL:Z97343EnsemblPlants:AT4G17360EnsemblPlants:AT4G17360.1
entrez:827448Gene3D:3.40.50.170GeneID:827448Genevisible:F4JP46
GO:GO:0005739GO:GO:0006189GO:GO:0006730GO:GO:0008864
GO:GO:0009853GO:GO:0016597GO:GO:0016742GO:GO:0046653
Gramene:AT4G17360.1gramene_pathway:2.1.2.2gramene_pathway:PWY-6121hmmpanther:PTHR10520
hmmpanther:PTHR10520:SF7InParanoid:F4JP46InterPro:IPR001555InterPro:IPR002376
InterPro:IPR002912InterPro:IPR004810KEGG:00630+3.5.1.10KEGG:00670+2.1.2.9
KEGG:00670+3.5.1.10KEGG:00970+2.1.2.9KEGG:ath:AT4G17360KO:K01433
OMA:IQDTLPIPANTHER:PTHR10520:SF7PaxDb:F4JP46Pfam:F4JP46
Pfam:PF00551Pfscan:PS51671PIR:H71442PRIDE:F4JP46
PRINTS:PR01575PRO:PR:F4JP46PROSITE:PS00373PROSITE:PS51671
ProteinModelPortal:F4JP46Proteomes:UP000006548RefSeq:NP_193467.2scanprosite:PS00373
SMR:F4JP46STRING:3702.AT4G17360.1SUPFAM:SSF53328SUPFAM:SSF55021
TAIR:AT4G17360UniGene:At.33006UniGene:At.48870unipathway:UPA00074
UniProt:F4JP46
Coordinates (TAIR10) chr4:-:9703698..9705468
Molecular Weight (calculated) 37298.20 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.16
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRRVSTTSC LSATAFRSFT KWSFKSSQFH GESLDSSVSP LLIPGFHVFH CPDVVGIVAK LSDCIAAKGG NILGYDVFVP ENKNVFYSRS EFIFDPVKWP
101: RRQMDEDFQT IAQKFSALSS VVRVPSLDPK YKIALLLSKQ DHCLVEMLHK WQDGKLPVDI TCVISNHERA PNTHVMRFLQ RHGISYHYLP TTDQNKIEEE
201: ILELVKGTDF LVLARYMQLL SGNFLKGYGK DVINIHHGLL PSFKGRNPVK QAFDAGVKLI GATTHFVTEE LDSGPIIEQM VERVSHRDNL RSFVQKSEDL
301: EKKCLMKAIK SYCELRVLPY GTQRTVVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)