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AT2G32290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-amylase 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta-amylase 6 (BAM6); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 5 (TAIR:AT4G15210.1); Has 842 Blast hits to 841 proteins in 166 species: Archae - 0; Bacteria - 87; Metazoa - 0; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G32290-MONOMERCAZy:GH14EC:3.2.1.2eggNOG:ENOG410IJER
eggNOG:ENOG410XNXSEMBL:AC005700EMBL:AY136463EMBL:CP002685
EnsemblPlants:AT2G32290EnsemblPlants:AT2G32290.1entrez:817789Gene3D:3.20.20.80
GeneID:817789Genevisible:Q8L762GO:GO:0000272GO:GO:0009507
GO:GO:0016161Gramene:AT2G32290.1gramene_pathway:3.2.1.2gramene_pathway:PWY-842
hmmpanther:PTHR31352hmmpanther:PTHR31352:SF5HOGENOM:HOG000238755InParanoid:Q8L762
InterPro:IPR001371InterPro:IPR001554InterPro:IPR013781InterPro:IPR017853
InterPro:IPR018238KEGG:00500+3.2.1.2KEGG:ath:AT2G32290ncoils:Coil
OMA:RENMEDFPaxDb:Q8L762Pfam:PF01373Pfam:Q8L762
PhylomeDB:Q8L762PIR:C84731PRIDE:Q8L762PRINTS:PR00750
PRINTS:PR00842PRO:PR:Q8L762PROSITE:PS00679ProteinModelPortal:Q8L762
Proteomes:UP000006548RefSeq:NP_180788.2scanprosite:PS00679SMR:Q8L762
STRING:3702.AT2G32290.1SUPFAM:SSF51445TAIR:AT2G32290tair10-symbols:BAM6
tair10-symbols:BMY5UniGene:At.38097UniGene:At.38099UniProt:Q8L762
Coordinates (TAIR10) chr2:-:13714643..13716906
Molecular Weight (calculated) 66571.20 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.57
Length 577 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSVLGMMNP NLINGRNLHK GSSIFVQDKE TKKRVQWRLS IKEGSLRTHQ ATASSATEPK ATEFNTTTYE DKMLTNYVPV YVMLQLGVIT NDNVLENEES
101: LKKQLKKLKQ SQVDGVMVDV WWGIVESKGP KQYQWSAYRN LFAIVQSFGL KLQAIMSFHR CGGNIGDDVN IPIPKWVLEI GDSNPDIFYT NKSGNRNKEC
201: LSLSVDNLSL FRGRTAVEMY RDYMKSFREN MEDFISSGVI IDIEVGLGPA GELRYPSYSE TQGWVFPGIG EFQCYDKYLR SDYEEEVRRI GHPEWKLPEN
301: AGEYNSVPGE TEFFEYSNGT YLKEEGNFFL SWYSKKLLLH GDQILDEANK VFLGCKLKIA AKVSGIHWWY KTESHAAELT AGYYNLKNRD GYRAIAKIMR
401: RHHAILNFTC LEMKNTEQPA KAKSGPQELV QQVLSSGWRE GIEVAGENAL PRFDRNGYNQ IILNARPNGV NQDGKPRMFG FTYLRLSDKL LNEPNFSTFK
501: MFLKRMHANQ EYCSEPERYN HELLPLERSR NDESLEMFME ETEPFDPFPW LDETDMSIRP FESVLSLLRS TFLRKKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)