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AT4G10120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.611
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sucrose-phosphate synthase family protein
Curator
Summary (TAIR10)
Encodes a protein with putative sucrose-phosphate synthase activity.
Computational
Description (TAIR10)
ATSPS4F; FUNCTIONS IN: sucrose-phosphate synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380), Sucrose synthase (InterPro:IPR000368), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose phosphate synthase 3F (TAIR:AT1G04920.1); Has 12483 Blast hits to 12368 proteins in 1939 species: Archae - 509; Bacteria - 8251; Metazoa - 30; Fungi - 116; Plants - 781; Viruses - 0; Other Eukaryotes - 2796 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0438eggNOG:KOG0853EMBL:KJ138763EnsemblPlants:AT4G10120
EnsemblPlants:AT4G10120.1EnsemblPlants:AT4G10120.2entrez:826603ExpressionAtlas:W8QNH3
Gene3D:3.40.50.1000GeneID:826603GO:GO:0005985GO:GO:0016157
GO:GO:0046524Gramene:AT4G10120.1Gramene:AT4G10120.2gramene_pathway:2.4.1.14
gramene_pathway:PWYQT-4467gramene_pathway:SUCSYN-PWYhmmpanther:PTHR12526hmmpanther:PTHR12526:SF358
InterPro:IPR000368InterPro:IPR001296InterPro:IPR006380InterPro:IPR012819
InterPro:IPR023214KEGG:00500+2.4.1.14KEGG:ath:AT4G10120KO:K00696
ncoils:CoilOMA:QIAWDDAPaxDb:W8QNH3Pfam:F4JLK2
Pfam:PF00534Pfam:PF00862Pfam:PF05116ProteinModelPortal:W8QNH3
RefSeq:NP_001031609.1RefSeq:NP_192750.2SMR:W8QNH3STRING:3702.AT4G10120.1
SUPFAM:SSF53756SUPFAM:SSF56784tair10-symbols:ATSPS4FTIGRfam:TIGR02468
TIGRFAMs:TIGR02468UniGene:At.27493unipathway:UPA00371UniProt:F4JLK2
UniProt:W8QNH3
Coordinates (TAIR10) chr4:+:6315033..6319785
Molecular Weight (calculated) 118885.00 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.46
Length 1050 amino acids
Sequence (TAIR10)
(BLAST)
0001: MARNDWINSY LEAILDVGTS KKKRFESNSK IVQKLGDINS KDHQEKVFGD MNGKDHQEKV FSPIKYFVEE VVNSFDESDL YKTWIKVIAT RNTRERSNRL
0101: ENICWRIWHL ARKKKQIVWD DGVRLSKRRI EREQGRNDAE EDLLSELSEG EKDKNDGEKE KSEVVTTLEP PRDHMPRIRS EMQIWSEDDK SSRNLYIVLI
0201: SMHGLVRGEN MELGRDSDTG GQVKYVVELA RALANTEGVH RVDLLTRQIS SPEVDYSYGE PVEMLSCPPE GSDSCGSYII RIPCGSRDKY IPKESLWPHI
0301: PEFVDGALNH IVSIARSLGE QVNGGKPIWP YVIHGHYADA GEVAAHLAGA LNVPMVLTGH SLGRNKFEQL LQQGRITRED IDRTYKIMRR IEAEEQSLDA
0401: AEMVVTSTRQ EIDAQWGLYD GFDIKLERKL RVRRRRGVSC LGRYMPRMVV IPPGMDFSYV LTQDSQEPDG DLKSLIGPDR NQIKKPVPPI WSEIMRFFSN
0501: PHKPTILALS RPDHKKNVTT LVKAFGECQP LRELANLVLI LGNRDDIEEM PNSSSVVLMN VLKLIDQYDL YGQVAYPKHH KQSEVPDIYR LAAKTKGVFI
0601: NPALVEPFGL TLIEAAAYGL PIVATRNGGP VDIVKALNNG LLVDPHDQQA ISDALLKLVA NKHLWAECRK NGLKNIHRFS WPEHCRNYLS HVEHCRNRHP
0701: TSSLDIMKVP EELTSDSLRD VDDISLRFST EGDFTLNGEL DAGTRQKKLV DAISQMNSMK GCSAAIYSPG RRQMLFVVAV DSYDDNGNIK ANLNEIIKNM
0801: IKAADLTSGK GKIGFVLASG SSLQEVVDIT QKNLINLEDF DAIVCNSGSE IYYPWRDMMV DADYETHVEY KWPGESIRSV ILRLICTEPA AEDDITEYAS
0901: SCSTRCYAIS VKQGVKTRRV DDLRQRLRMR GLRCNIVYTH AATRLNVIPL CASRIQALRY LSIRWGIDMS KTVFFLGEKG DTDYEDLLGG LHKTIILKGV
1001: VGSDSEKLLR SEENFKREDA VPQESPNISY VKENGGSQEI MSTLEAYGIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)