suba logo
AT5G01220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24124904 (2013): plastid
  • PMID:22923678 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sulfoquinovosyldiacylglycerol 2
Curator
Summary (TAIR10)
involved in sulfolipid biosynthesis
Computational
Description (TAIR10)
sulfoquinovosyldiacylglycerol 2 (SQD2); FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G59070.1); Has 35941 Blast hits to 35876 proteins in 3155 species: Archae - 1250; Bacteria - 26211; Metazoa - 142; Fungi - 236; Plants - 1690; Viruses - 2; Other Eukaryotes - 6410 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-1202CAZy:GT4EC:2.4.1.-eggNOG:COG0438
eggNOG:KOG1111EMBL:AF454354EMBL:AL137189EMBL:AY045961
EMBL:BT005796EMBL:CP002688EMBL:KJ138712EnsemblPlants:AT5G01220
EnsemblPlants:AT5G01220.1entrez:831888GeneID:831888Genevisible:Q8S4F6
GO:GO:0008194GO:GO:0009247GO:GO:0009507GO:GO:0009536
GO:GO:0009941GO:GO:0016021GO:GO:0016036GO:GO:0031969
GO:GO:0046506Gramene:AT5G01220.1gramene_pathway:2.1.1.-gramene_pathway:PWYQT-4427
hmmpanther:PTHR12526hmmpanther:PTHR12526:SF340HOGENOM:HOG000077285InterPro:IPR001296
InterPro:IPR028098iPTMnet:Q8S4F6KEGG:ath:AT5G01220KO:K06119
OMA:SFNPRFRPaxDb:Q8S4F6Pfam:PF00534Pfam:PF13439
Pfam:PF13579Pfam:Q8S4F6PhylomeDB:Q8S4F6PIR:T45962
PRIDE:Q8S4F6PRO:PR:Q8S4F6ProMEX:Q8S4F6ProteinModelPortal:Q8S4F6
Proteomes:UP000006548RefSeq:NP_568085.2SMR:Q8S4F6STRING:3702.AT5G01220.1
SUPFAM:SSF53756TAIR:AT5G01220tair10-symbols:SQD2UniGene:At.47995
UniProt:Q8S4F6
Coordinates (TAIR10) chr5:-:86907..89885
Molecular Weight (calculated) 56633.50 Da
IEP (calculated) 8.65
GRAVY (calculated) -0.11
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTLSSINLS IPPHLLPSTT NTCSSSSATS CSPPRSSSFV LHSPLSFGHR RLPISKKSKL RFCGVITKEA VSGSNDMTIT QVREDDESEI DAPLLDPESL
101: SKPRRIALFV EPSPFAYVSG YKNRFQNFIR YLREMGDEVI VVTTHEGVPE EFYGARVIGS RSFPCPYYQK VPLSLALSPR IISEIARFKP DIIHASSPGV
201: MVFGALAIAK MLSVPIVMSY HTHVPVYIPR YTFSWLVKPM WSIIRFLHRA ADLTLVPSAA IGKDLIAAGA TAANQLRLWN KGVDSESFNP RFRSQEMRIR
301: LSNGEPEKPL VIHVGRIGVE KSLELLKSVM DKLPEARIAF IGDGPYKEDL EKLFTGMPAV FTGTLQGDEL SQAYASGDVF VMPSESETLG LVVLEAMSSG
401: LPVVAARAGG IPDIIPEDQE GKTGFLFNPG DVEDCVTKLR TLLHDRETRE IIGKAAREET EKYDWRAATT KIRNEQYSAA IWFWRKKKVH VLGPINWLIK
501: RLFPVPEGNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)