AT3G56040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UDP-glucose pyrophosphorylase 3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
UDP-glucose pyrophosphorylase 3 (UGP3); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); Has 215 Blast hits to 211 proteins in 91 species: Archae - 0; Bacteria - 18; Metazoa - 12; Fungi - 60; Plants - 85; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20792689..20797482 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99048.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 883 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANPQASPIL HHPQNHLSLF HFRTTTSPRS FSSLHFRKPL LFLSSSSSFS SKLQQSEQQC NNHQVRHVST VPVEYSTPTP PESDDFLSEI DRLKSLLSKL 101: DVSKDLRRKD AVIDADSRVR RFFSENRGGL SKVFGYLGLN SNEMFLVKCV IAAGQEHALC MNYEEAFGEE EEEYTVRSSV KNALYALVEM IERFDVNSSG 201: YKGRREMGTV LDSEEIAHFR KFLTFLEEIE QFYDCIGGII GYQVMVLELL HQSSKRRNTN RSQLVEESLG CQYLEMHTPS VLDLTQEEDY ASQAALWGIE 301: GLPDLGEIYP LGGAADRLGL IDSETGECLP AAMLAHCGRT LLEGLIRDLQ AREFLYFKLY GKQCVTPVAI MTSAAKNNHE HVSSLCERLK WFGRGQSNFR 401: LFEQPLVPAV SAEDGQWIVS KPFVPVSKPG GHGVIWKLAY DKGVFNWFYD HGRKGATVRQ VSNVVAATDV TLLALAGIGL RYNKKLGFAS CKRNAGATEG 501: INVLMEKKNF DGKWEYGISC IEYTEFDKFD ISNRSPSSNG LQADFPANTN ILYVDLHSAE LIGSSSNAKS LPNMVLNTKK RIEYLDQYGD YHSVMGGRLE 601: CTMQNIADNF FNKFPSRCHG SLEDKLDTYI VYNERRKVTS SAKKKKPHAS AALHQTPDGA LLDILRNGYD LLTECDIKLP MIEANDKYVD SPPPYLILLH 701: PALGPLWEVS RQKFKGGSIS SCSELQLEIA EFSWNNVQVD GSLIVTAENA MGSTTPNDNG EPILQYGLRC GKCKLHNVNV VNRGIDWNSK SNVYWRNDVN 801: RLETCKIILH GNAEFEASNV TIEGHHVFEV PDGHKLKITS GNAGLSINLE ALKEEVMETG SWYWNYQLNG SHIHLQQVEV SQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)