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AT2G42690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.566
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22215637 (2012): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G18550.1); Has 772 Blast hits to 765 proteins in 118 species: Archae - 0; Bacteria - 26; Metazoa - 4; Fungi - 158; Plants - 461; Viruses - 1; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G42690-MONOMEREC:3.1.1.-eggNOG:ENOG410IQ33eggNOG:ENOG410YCH0
EMBL:AC006931EMBL:AC007087EMBL:AK318751EMBL:AY050998
EMBL:AY079356EMBL:CP002685EnsemblPlants:AT2G42690EnsemblPlants:AT2G42690.1
entrez:818869ESTHER:arath-AT2G42690Gene3D:3.40.50.1820GeneID:818869
Genevisible:Q9SJI7GO:GO:0005737GO:GO:0008970GO:GO:0009507
GO:GO:0009650GO:GO:0016042GO:GO:0071493gramene_pathway:3.1.1.3
gramene_pathway:LIPAS-PWYhmmpanther:PTHR31828hmmpanther:PTHR31828:SF2HOGENOM:HOG000238127
InParanoid:Q9SJI7InterPro:IPR002921InterPro:IPR029058iPTMnet:Q9SJI7
KEGG:ath:AT2G42690OMA:RVMKGWYPaxDb:Q9SJI7Pfam:PF01764
Pfam:Q9SJI7PhylomeDB:Q9SJI7PIR:A84857PRIDE:Q9SJI7
PRO:PR:Q9SJI7PROSITE:PS00120ProteinModelPortal:Q9SJI7Proteomes:UP000006548
RefSeq:NP_181797.1SMR:Q9SJI7STRING:3702.AT2G42690.1SUPFAM:SSF53474
TAIR:AT2G42690UniGene:At.14148UniGene:At.24758UniProt:Q9SJI7
Coordinates (TAIR10) chr2:-:17776356..17777682
Molecular Weight (calculated) 46059.50 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.33
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTTTSWEE LLGSKNWDTI LDPLDQSLRE LILRCGDFCQ ATYDAFVNDQ NSKYCGASRY GKSSFFDKVM LENASDYEVV NFLYATARVS LPEGLLLQSQ
101: SRDSWDRESN WFGYIAVTSD ERSKALGRRE IYIALRGTSR NYEWVNVLGA RPTSADPLLH GPEQDGSGGV VEGTTFDSDS EDEEGCKVML GWLTIYTSNH
201: PESKFTKLSL RSQLLAKIKE LLLKYKDEKP SIVLTGHSLG ATEAVLAAYD IAENGSSDDV PVTAIVFGCP QVGNKEFRDE VMSHKNLKIL HVRNTIDLLT
301: RYPGGLLGYV DIGINFVIDT KKSPFLSDSR NPGDWHNLQA MLHVVAGWNG KKGEFKLMVK RSIALVNKSC EFLKAECLVP GSWWVEKNKG LIKNEDGEWV
401: LAPVEEEPVP EF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)