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AT5G17230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PHYTOENE SYNTHASE
Curator
Summary (TAIR10)
Encodes phytoene synthase.
Computational
Description (TAIR10)
PHYTOENE SYNTHASE (PSY); FUNCTIONS IN: phytoene synthase activity, geranylgeranyl-diphosphate geranylgeranyltransferase activity; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene/phytoene synthase, conserved site (InterPro:IPR019845), Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G17230-MONOMERBioCyc:ARA:GQT-752-MONOMERBioCyc:ARA:GQT-753-MONOMERBioCyc:MetaCyc:AT5G17230-MONOMER
BioGrid:16863BRENDA:2.5.1.32EC:2.5.1.32eggNOG:COG1562
eggNOG:KOG1459EMBL:AB005238EMBL:AF009954EMBL:AY085565
EMBL:BT000450EMBL:BT002084EMBL:CP002688EMBL:L25812
EnsemblPlants:AT5G17230EnsemblPlants:AT5G17230.1EnsemblPlants:AT5G17230.2entrez:831587
ExpressionAtlas:P37271Gene3D:1.10.600.10GeneID:831587Genevisible:P37271
GO:GO:0009507GO:GO:0016117GO:GO:0016767gramene_pathway:2.5.1.32
gramene_pathway:PWY-6475gramene_plant_reactome:1119449gramene_plant_reactome:6873840gramene_plant_reactome:6876742
hmmpanther:PTHR31480hmmpanther:PTHR31480:SF2HOGENOM:HOG000220848InParanoid:P37271
InterPro:IPR002060InterPro:IPR008949InterPro:IPR019845iPTMnet:P37271
KEGG:ath:AT5G17230KO:K02291PaxDb:P37271Pfam:P37271
Pfam:PF00494PhylomeDB:P37271PRIDE:P37271PRO:PR:P37271
PROSITE:PS01044PROSITE:PS01045ProteinModelPortal:P37271Proteomes:UP000006548
RefSeq:NP_001031895.1RefSeq:NP_197225.1scanprosite:PS01044scanprosite:PS01045
SMR:P37271STRING:3702.AT5G17230.3SUPFAM:SSF48576TAIR:AT5G17230
tair10-symbols:PSYUniGene:At.23726UniPathway:UPA00799UniProt:P37271
Coordinates (TAIR10) chr5:-:5659839..5662087
Molecular Weight (calculated) 47489.20 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.23
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSVAVLWV ATSSLNPDPM NNCGLVRVLE SSRLFSPCQN QRLNKGKKKQ IPTWSSSFVR NRSRRIGVVS SSLVASPSGE IALSSEEKVY NVVLKQAALV
101: NKQLRSSSYD LDVKKPQDVV LPGSLSLLGE AYDRCGEVCA EYAKTFYLGT LLMTPERRKA IWAIYVWCRR TDELVDGPNA SHITPMALDR WEARLEDLFR
201: GRPFDMLDAA LADTVARYPV DIQPFRDMIE GMRMDLKKSR YQNFDDLYLY CYYVAGTVGL MSVPVMGIDP KSKATTESVY NAALALGIAN QLTNILRDVG
301: EDARRGRVYL PQDELAQAGL SDEDIFAGKV TDKWRNFMKM QLKRARMFFD EAEKGVTELS AASRWPVWAS LLLYRRILDE IEANDYNNFT KRAYVGKVKK
401: IAALPLAYAK SVLKTSSSRL SI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)