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AT3G29240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF179)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF179); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 1065 Blast hits to 1065 proteins in 382 species: Archae - 0; Bacteria - 730; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIZIeggNOG:ENOG410Y35PEMBL:AB026657EMBL:AY079021
EMBL:AY084920EMBL:AY139756EMBL:BT004545EMBL:CP002686
EnsemblPlants:AT3G29240EnsemblPlants:AT3G29240.1EnsemblPlants:AT3G29240.2entrez:822579
GeneID:822579GO:GO:0009507Gramene:AT3G29240.1Gramene:AT3G29240.2
hmmpanther:PTHR31984hmmpanther:PTHR31984:SF3HOGENOM:HOG000238547InterPro:IPR003774
KEGG:ath:AT3G29240OMA:HTIHEPEPfam:PF02622PhylomeDB:Q9LS71
Proteomes:UP000006548RefSeq:NP_566847.1RefSeq:NP_850648.1SUPFAM:SSF143456
TAIR:AT3G29240UniGene:At.21226UniProt:Q9LS71
Coordinates (TAIR10) chr3:+:11191780..11192868
Molecular Weight (calculated) 34553.30 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.09
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MDACFLTSRS ISGVKELVPF IKARIFTCPK RNSGQFVTRK VASPISVNCS LSDSWKPLED DADLFKDCVN NSTSDADWRE FRARLVAGEQ AATSEKDQPS
101: WSNPDMVVDY QPSSSSLITI GSKWAHKIHE PETGCLLIAT EKLDGVHIFE KTVILLLSVG PSGPIGVILN RPSLMSIKET KSTILDMAGT FSDKRLFFGG
201: PLEEGLFLVS PRSGGDNEVG KSGVFRQVMK GLYYGTRESV GLAAEMVKRN LVGRSELRFF DGYCGWEKEQ LKAEILGGYW TVAACSSTVV ELGSAVQSHG
301: LWDEVLGLIG PQTGSVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)