AT1G73170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10420.2); Has 1167 Blast hits to 1151 proteins in 497 species: Archae - 17; Bacteria - 819; Metazoa - 47; Fungi - 4; Plants - 122; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27511722..27514783 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73739.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||
| Length | 666 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSLSLSNHV PPLTLLSHER RILKLQSRSS ILFHQLFHTK FLLLSNSSSL SSSHGVVAIS ASPSSVAVPE LEDEDHFDDE LRRLLALVPE EIRQTLKEHP 101: EISELIEIVL DLGRKPLARF PSGDFVISDD AVRVKDLEFA VSQVGEFTND NRAGISRTLH RISAIRNRKG EIIGLTCRVG RSVRGSANLL RDLVQDGNSL 201: LLIGPPGVGK TTMIREVARM LGNDYEKRVM IVDTSNEIGG DGDIPHPGIG NARRMQVPNS DIQHKVLIEA VENHMPQVIV IDEIGTKLEA IAASTIAERG 301: IQLVATAHGA TIENLIKNPS LDLLVGGVQS VTLGDEEATR RGGQKTVLER KGPSTFNCGA EIVSKTEVRV HRSLEATVDA ILAGRLPNVE IRKIKSHGVE 401: VIMEKEPFID EKTVDKKHEE ETLDVSKLTK EETVSEVLQT KEITEAESSE KDTLMYLYVY GIAESTVLQA IKQLEMETAV ELTDDISEAE ALLALQAKIR 501: KNPRIKSFAT SHGIPVYVTK TNSGIQVAKA IRALLTDYED GLGEFGSEDR LKLSEKMDAL EEARLAIERI VIPKKETTDL LPRPPRIVSL QGKLVRKYNL 601: RSERKWRGDE MYLRILPYST EEDRDDREDE GEFGEANGEE LDELGFATGE SNDSPSGIDR LPLLPD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)