AT5G12150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rho GTPase activation protein (RhoGAP) with PH domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Rho GTPase activation protein (RhoGAP) with PH domain; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: Rho GTPase activation protein (RhoGAP) with PH domain (TAIR:AT5G19390.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3924393..3930100 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91356.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 827 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEASLAVIQR PQAGASNTVY KSGPLFISSK GLGWTSWKKR WFILTRTSLV FFKNDPSALP QKGGEVNLTL GGIDLNSSGS VVVREDKKLL TVLFPDGRDG 101: RAFTLKAETL DDLYEWKAAL EQALAQAPNA ALVIGQNGIF RTEANNTIEA SFNSWRDQRP LKSSVVGRPI LLALEEIDGS PSFLEKALQF LETYGTKVEG 201: ILRQSADVEE VERRVQEYEQ GKTEFSPEED PHVVGDCVKH VLRQLPSSPV PASCCTALLE AYKIDQNEAR VNSLRSAIIE TFPEPNRRLL LRMLKMMHTI 301: TSHSSENRMT SSAVAACMSP LLLRPLLAGE CDLEGFDTLG DNSAQLLAAA NAANNAQAIV TALLEDYGNM INDEGLGRCS TSTDSHIGDS GPENSSDEEE 401: IVVKHPDLHT LDIEEGETDD DNDVLLSRKP SESSDYAGSD LYDYKGFGVE DSDAESPRDI HCSVESTDFS ARVKKHIEEP IKDIEVSSVS PTENCYQSGR 501: EAIPSVTPST PLTALRYTTS AEKPASKTTG SSTVNSKRSS SWGRGNGKKT PAKGSFDSSG NDELLIQRLE HMKDELRQRI AKEAKGNAAL QASLERRKQA 601: LHERRLALEQ DVGRLQEQLQ AERDLRSALE VGLSISCGQF SSQAADSKTR AELEEIALAE ADVARLKQKV AELHHQLSQQ RQHHLSSLPD AQSHHQFLHN 701: HNTQLKSFQQ DFDSILAFVN HERNQRTDET SLRADWRNGR GNNRQVPGSP SLNAASLGIP MEEYSPVMDY GRHHHPPATS AALMELTTRL DFFKERRSQL 801: MEQIQNLDLN YGSSSSSLHR SSSPPWN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)