AT4G32330.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.968 ASURE: cytoskeleton What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TPX2 (targeting protein for Xklp2) protein family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT2G25480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:15609801..15611867 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47545.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.99 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.11 | ||||||||||||||||||||||||||||||||||||||||
| Length | 437 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPESIMAAD GTDSAPANGG LAMENVCVKE NGAVSVETVD TTSESQNENS ANSSTLDTIE HVKEAAEGTQ VEHVDDSKCM KGEKAQRKPR HEKLSGGKNN 101: SSVHIKKSKE GKSADAKVAA SNGSVAPNVQ TTNPLKSKSF NGREAQVTKQ GKHDSAPAES ADGEKVKPKS QKKQAHETSE DDTQSSNSPK ADDGKPRKVG 201: ALPNYGFSFK CDQRAEKRKE FYVKLEEKTH AKEEEINSMQ AKSKETQEAE LRMLRKSLNF KATPMPSFYQ EPQPPKTELK KIPPTRPKSP KLGRKKTASG 301: ADSEETQTPR LGRLSLDERA SKDNPTAKGI MPTVDLKKQP VRKSLPRLPS QKTVLPDGKP APAKAAIIPA KVRPEKKKLE KDAETVNQTS HPTEEEAQVT 401: VSSNADVEDS HETVSPRMNE DRADKSIEVS EAVAVEH |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)