AT5G06220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LETM1-like protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LETM1-like protein; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT3G11560.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1880049..1885366 | ||||||||||||||||||||
| Molecular Weight (calculated) | 92412.30 Da | ||||||||||||||||||||
| IEP (calculated) | 5.57 | ||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||
| Length | 832 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVKFHRPGL VPSSCSNPWM SVGTLISCRR VLQLDYISNC CGNSRTQLFV TYDDKNYFLQ RKLFGNKKMS SRRTTQPFLL ASAEDGVAVN GSRASDDVQE 101: MRAKLSGSLQ DEYSCGELIQ SLHDAARTFE LALKEKISSS RLPWFSAAWL GVDRNAWVKT FSYQASVYCL LQAANEVSSR GNNRDDDLNV FVQRSLSRQA 201: APLDSMMRDK LSSSHPEANE WFWSGQVPSA VTSFVNCFEG DQRFVSATSV YVKSNSTAAS NEIEVSLLML VLNCIAAVTK LGPTKLSCPP FFSVIPDTTG 301: RLMDKFVGFV PLPQTYHSMK TLGLRREFLL HFGPRAAACR VKSDCDTDEV VFWVDLIQNQ LLRAIDREKI WSRLITSESI EVLDRDLAIF GFFIALGKST 401: QSFLAANGFS SLENPVEDLV RHFIGGSLLQ YPQLSAISSY QLYVESFIKY SKWPENPSNV KAAKFLSKGH NKLIQCQEEL GISSLAVTEA SFIDMTSSST 501: DGESSSFDKA LESVDGALVR LESLLQQLHA SSSSSGKEQI KAACSDLEKI RKLKKEAEFL EASFRAKAAS LQEGGGDSDS QEYSEEQSQY LRGKDPKNSI 601: NSVDQGTSRD SGFWGFFVRT PKGKPGPESL TDKYFEKSRE NVDNVDSNPN EIYRFELLRN ELIELEKRVQ GSTDESGRTS EDLPKSSSST KGVQLVQSSK 701: KENVIEKTLD QLKDATTDVW QGTQLLAFDS AAAMELLRRS VVGDELTEKE KKALRRTMTD LASVVPIGVL MLLPVTAVGH AAMLAAIQRY VPGLIPSTYG 801: AERLNLLRQL EKVKQMQTNE TEPEEGIDEP ES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)