AT3G11560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LETM1-like protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LETM1-like protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 56 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3639553..3643450 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 69683.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||
| Length | 619 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAARLQRPGL VSSSSTSKPC LPRMSIVTFI SCKRTVHLEY LSNCLSNPRS QLFVRYGFLE RSNKKKSQRL VLASAEDGVA INGSPQPRSS SNLEDMRTSF 101: TGSLQDENNS NGLNQSLHDA ARSIELAVKE KITPSRFSWF PSTWLGADKY AWVKTLSYQA SLYSLLQAVN EISSRGNYRD EDINVFVQRS LSRQAAPLEN 201: MMRENLSSKH PKAYEWFWSE QVPSVVTSFV NYLEGDQRFV AATSVYAKGK SAAASNEIEV SLLMLVLNCI AAITKVGPAK FSCPPFFSMI PDTTGRLMEK 301: LVDFVPLPQA YHSIKSIGLQ REFLTHFGPR AAVCRVNGDI DTDEVIFWVD LIQKQLQRAI DREKIWSKLT TSESIEVLER DLAIFGFFIA LGRSTQSILA 401: ANGFDSLENP LEDLVRHLIG GSVLYYPQLS AISSYQLYVE VVCEELEWIP FYPNNTGTQP PNQSHGHKTK PEGPPNYEVI PQLLDVCSYW LQSFIKYSKW 501: PENPSNVKAA KFLSKGHKTL VRCKEELGIL KNASSIVRES NSFDKALESV DEALVRLESL LQELYVSNSS SGKEQIKAAC SDLEKIRKLK KEAEFLEATF 601: RAKAASLQQV FFFHCHFLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)