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AT1G19720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 61333 Blast hits to 15549 proteins in 316 species: Archae - 3; Bacteria - 46; Metazoa - 404; Fungi - 515; Plants - 59134; Viruses - 0; Other Eukaryotes - 1231 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007797EMBL:AC024609
EMBL:AJ006040EMBL:AK229137EMBL:CP002684EnsemblPlants:AT1G19720
EnsemblPlants:AT1G19720.1entrez:838561Gene3D:1.25.40.10GeneID:838561
GO:GO:0005634GO:GO:0005737GO:GO:0008270GO:GO:0009507
Gramene:AT1G19720.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF339HOGENOM:HOG000237570
InParanoid:Q9FXH1InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT1G19720OMA:CAYTEDLPaxDb:Q9FXH1Pfam:PF01535
Pfam:PF13041Pfam:PF14432Pfam:Q9FXH1Pfscan:PS51375
PhylomeDB:Q9FXH1PIR:C86330PIR:T52647PRIDE:Q9FXH1
PRO:PR:Q9FXH1PROSITE:PS51375ProteinModelPortal:Q9FXH1Proteomes:UP000006548
RefSeq:NP_173402.2SMR:Q9FXH1STRING:3702.AT1G19720.1SUPFAM:SSF81901
TAIR:AT1G19720TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.16215
UniProt:Q9FXH1
Coordinates (TAIR10) chr1:-:6819926..6822610
Molecular Weight (calculated) 100821.00 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.18
Length 894 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKLFVPSFP KTFLNYQTPA KVENSPELHP KSRKKNLSFT KKKEPNIIPD EQFDYLCRNG SLLEAEKALD SLFQQGSKVK RSTYLKLLES CIDSGSIHLG
101: RILHARFGLF TEPDVFVETK LLSMYAKCGC IADARKVFDS MRERNLFTWS AMIGAYSREN RWREVAKLFR LMMKDGVLPD DFLFPKILQG CANCGDVEAG
201: KVIHSVVIKL GMSSCLRVSN SILAVYAKCG ELDFATKFFR RMRERDVIAW NSVLLAYCQN GKHEEAVELV KEMEKEGISP GLVTWNILIG GYNQLGKCDA
301: AMDLMQKMET FGITADVFTW TAMISGLIHN GMRYQALDMF RKMFLAGVVP NAVTIMSAVS ACSCLKVINQ GSEVHSIAVK MGFIDDVLVG NSLVDMYSKC
401: GKLEDARKVF DSVKNKDVYT WNSMITGYCQ AGYCGKAYEL FTRMQDANLR PNIITWNTMI SGYIKNGDEG EAMDLFQRME KDGKVQRNTA TWNLIIAGYI
501: QNGKKDEALE LFRKMQFSRF MPNSVTILSL LPACANLLGA KMVREIHGCV LRRNLDAIHA VKNALTDTYA KSGDIEYSRT IFLGMETKDI ITWNSLIGGY
601: VLHGSYGPAL ALFNQMKTQG ITPNRGTLSS IILAHGLMGN VDEGKKVFYS IANDYHIIPA LEHCSAMVYL YGRANRLEEA LQFIQEMNIQ SETPIWESFL
701: TGCRIHGDID MAIHAAENLF SLEPENTATE SIVSQIYALG AKLGRSLEGN KPRRDNLLKK PLGQSWIEVR NLIHTFTTGD QSKLCTDVLY PLVEKMSRLD
801: NRSDQYNGEL WIEEEGREET CGIHSEKFAM AFGLISSSGA SKTTIRILKN LRMCRDCHDT AKYVSKRYGC DILLEDTRCL HHFKNGDCSC KDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)