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AT2G17525.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007584EMBL:AY208187
EMBL:CP002685EnsemblPlants:AT2G17525EnsemblPlants:AT2G17525.1entrez:816259
GeneID:816259GO:GO:0005739Gramene:AT2G17525.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF753InParanoid:Q84VG6InterPro:IPR002885KEGG:ath:AT2G17525
OMA:FYRKKMMPaxDb:Q84VG6Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:PF13812Pfam:Q84VG6Pfscan:PS51375
PhylomeDB:Q84VG6PRO:PR:Q84VG6PROSITE:PS51375ProteinModelPortal:Q84VG6
Proteomes:UP000006548RefSeq:NP_671862.1SMR:Q84VG6STRING:3702.AT2G17525.1
TAIR:AT2G17525TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.45730
UniProt:Q84VG6
Coordinates (TAIR10) chr2:+:7624178..7626058
Molecular Weight (calculated) 70347.10 Da
IEP (calculated) 7.71
GRAVY (calculated) 0.06
Length 626 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRILKLSTS SRSVPLTRLW LLQLPCFCSS SSSSSSLLSV PSDDHIVRLI LDQKSASGAL ETFRWASTFP GFIHSRSTYR ALFHKLCVFR RFDTVYQLLD
101: EMPDSIGLPP DDAIFVTIIR GFGRARLIKR VISVVDLVSK FGIKPSLKVF NSILDVLVKE DIDIAREFFT RKMMASGIHG DVYTYGILMK GLSLTNRIGD
201: GFKLLQIMKT SGVAPNAVVY NTLLHALCKN GKVGRARSLM SEMKEPNDVT FNILISAYCN EQKLIQSMVL LEKCFSLGFV PDVVTVTKVM EVLCNEGRVS
301: EALEVLERVE SKGGKVDVVA CNTLVKGYCA LGKMRVAQRF FIEMERKGYL PNVETYNLLI AGYCDVGMLD SALDTFNDMK TDAIRWNFAT FNTLIRGLSI
401: GGRTDDGLKI LEMMQDSDTV HGARIDPYNC VIYGFYKENR WEDALEFLLK MEKLFPRAVD RSFKLISLCE KGGMDDLKTA YDQMIGEGGV PSIIVSHCLI
501: HRYSQHGKIE ESLELINDMV TRGYLPRSST FNAVIIGFCK QDKVMNGIKF VEDMAERGCV PDTESYNPLL EELCVKGDIQ KAWLLFSRMV EKSIVPDPSM
601: WSSLMFCLSQ KTAIHVNSSL QDIIQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)