AT3G05340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.731 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G25970.1); Has 36706 Blast hits to 13004 proteins in 235 species: Archae - 0; Bacteria - 2; Metazoa - 52; Fungi - 64; Plants - 36145; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1524071..1526047 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73132.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 658 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSRWVIQKL TSHLPSCLST VLSPSKILIR QSPNYQVSTF LLNHVDMSLL LSICGREGWF PHLGPCLHAS IIKNPEFFEP VDADIHRNAL VVWNSLLSLY 101: AKCGKLVDAI KLFDEMPMRD VISQNIVFYG FLRNRETESG FVLLKRMLGS GGFDHATLTI VLSVCDTPEF CLVTKMIHAL AILSGYDKEI SVGNKLITSY 201: FKCGCSVSGR GVFDGMSHRN VITLTAVISG LIENELHEDG LRLFSLMRRG LVHPNSVTYL SALAACSGSQ RIVEGQQIHA LLWKYGIESE LCIESALMDM 301: YSKCGSIEDA WTIFESTTEV DEVSMTVILV GLAQNGSEEE AIQFFIRMLQ AGVEIDANVV SAVLGVSFID NSLGLGKQLH SLVIKRKFSG NTFVNNGLIN 401: MYSKCGDLTD SQTVFRRMPK RNYVSWNSMI AAFARHGHGL AALKLYEEMT TLEVKPTDVT FLSLLHACSH VGLIDKGREL LNEMKEVHGI EPRTEHYTCI 501: IDMLGRAGLL KEAKSFIDSL PLKPDCKIWQ ALLGACSFHG DTEVGEYAAE QLFQTAPDSS SAHILIANIY SSRGKWKERA KTIKRMKAMG VTKETGISSI 601: EIEHKTHSFV VEDKLHPQAE AIYDVLSGLF PVMVDEGYRP DKRFILCYTG DDRNGTVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)