AT3G63370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a chloroplast RNA editing factor. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 44; Fungi - 62; Plants - 47536; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:23402080..23405180 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98854.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.28 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 884 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEYAVTNMRL LSNMMYSASA ISFPRVRLHC SIPTEPSCRR NPFRQSNQPV QVPSPKLACF DGVLTEAFQR LDVSENNSPV EAFAYVLELC GKRRAVSQGR 101: QLHSRIFKTF PSFELDFLAG KLVFMYGKCG SLDDAEKVFD EMPDRTAFAW NTMIGAYVSN GEPASALALY WNMRVEGVPL GLSSFPALLK ACAKLRDIRS 201: GSELHSLLVK LGYHSTGFIV NALVSMYAKN DDLSAARRLF DGFQEKGDAV LWNSILSSYS TSGKSLETLE LFREMHMTGP APNSYTIVSA LTACDGFSYA 301: KLGKEIHASV LKSSTHSSEL YVCNALIAMY TRCGKMPQAE RILRQMNNAD VVTWNSLIKG YVQNLMYKEA LEFFSDMIAA GHKSDEVSMT SIIAASGRLS 401: NLLAGMELHA YVIKHGWDSN LQVGNTLIDM YSKCNLTCYM GRAFLRMHDK DLISWTTVIA GYAQNDCHVE ALELFRDVAK KRMEIDEMIL GSILRASSVL 501: KSMLIVKEIH CHILRKGLLD TVIQNELVDV YGKCRNMGYA TRVFESIKGK DVVSWTSMIS SSALNGNESE AVELFRRMVE TGLSADSVAL LCILSAAASL 601: SALNKGREIH CYLLRKGFCL EGSIAVAVVD MYACCGDLQS AKAVFDRIER KGLLQYTSMI NAYGMHGCGK AAVELFDKMR HENVSPDHIS FLALLYACSH 701: AGLLDEGRGF LKIMEHEYEL EPWPEHYVCL VDMLGRANCV VEAFEFVKMM KTEPTAEVWC ALLAACRSHS EKEIGEIAAQ RLLELEPKNP GNLVLVSNVF 801: AEQGRWNDVE KVRAKMKASG MEKHPGCSWI EMDGKVHKFT ARDKSHPESK EIYEKLSEVT RKLEREKGKR ELAREFNARE KMET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)