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AT4G25270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At4g25270-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At4g25270-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At4g25270-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G46790.1); Has 37561 Blast hits to 13487 proteins in 239 species: Archae - 0; Bacteria - 6; Metazoa - 116; Fungi - 110; Plants - 36880; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL035396EMBL:AL161563
EMBL:CP002687EnsemblPlants:AT4G25270EnsemblPlants:AT4G25270.1entrez:828630
Gene3D:1.25.40.10GeneID:828630Genevisible:Q9SB36GO:GO:0008380
GO:GO:0009507Gramene:AT4G25270.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF497
HOGENOM:HOG000006216InParanoid:Q9SB36InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT4G25270OMA:LYFQMEEPaxDb:Q9SB36Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:Q9SB36Pfscan:PS51375
PhylomeDB:Q9SB36PIR:T05548PRIDE:Q9SB36PRO:PR:Q9SB36
PROSITE:PS51375ProteinModelPortal:Q9SB36Proteomes:UP000006548RefSeq:NP_194257.1
SMR:Q9SB36STRING:3702.AT4G25270.1SUPFAM:SSF48452TAIR:AT4G25270
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.32276UniProt:Q9SB36
Coordinates (TAIR10) chr4:-:12937253..12938836
Molecular Weight (calculated) 59538.80 Da
IEP (calculated) 7.09
GRAVY (calculated) -0.17
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSIVVHKPS FSYPSVSSSS MKKKPRHHQQ LKQHRQNQYN NNGFTSLSFT KPSPTPLLIE KQSIHRTQLE ALDSVITDLE TSAQKGISLT EPEIFASLLE
101: TCYSLRAIDH GVRVHHLIPP YLLRNNLGIS SKLVRLYASC GYAEVAHEVF DRMSKRDSSP FAWNSLISGY AELGQYEDAM ALYFQMAEDG VKPDRFTFPR
201: VLKACGGIGS VQIGEAIHRD LVKEGFGYDV YVLNALVVMY AKCGDIVKAR NVFDMIPHKD YVSWNSMLTG YLHHGLLHEA LDIFRLMVQN GIEPDKVAIS
301: SVLARVLSFK HGRQLHGWVI RRGMEWELSV ANALIVLYSK RGQLGQACFI FDQMLERDTV SWNAIISAHS KNSNGLKYFE QMHRANAKPD GITFVSVLSL
401: CANTGMVEDG ERLFSLMSKE YGIDPKMEHY ACMVNLYGRA GMMEEAYSMI VQEMGLEAGP TVWGALLYAC YLHGNTDIGE VAAQRLFELE PDNEHNFELL
501: IRIYSKAKRA EDVERVRQMM VDRGLET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)