AT1G80880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 26859 Blast hits to 9675 proteins in 280 species: Archae - 3; Bacteria - 25; Metazoa - 333; Fungi - 256; Plants - 25481; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:30395194..30396921 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61711.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 540 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAIVAIGRK LARTPQWRIV QHQSLLRRAV STSFSSSVSQ NHSFSSAFHR AGHVHSQVLS YLPHFASSNR FSTKTISETF DINLTALAPL EKGLIDLIRQ 101: VSELESEADA MASLEDSSFD LNHDSFYSLI WELRDEWRLA FLAFKWGEKR GCDDQKSCDL MIWVLGNHQK FNIAWCLIRD MFNVSKDTRK AMFLMMDRYA 201: AANDTSQAIR TFDIMDKFKH TPYDEAFQGL LCALCRHGHI EKAEEFMLAS KKLFPVDVEG FNVILNGWCN IWTDVTEAKR IWREMGNYCI TPNKDSYSHM 301: ISCFSKVGNL FDSLRLYDEM KKRGLAPGIE VYNSLVYVLT REDCFDEAMK LMKKLNEEGL KPDSVTYNSM IRPLCEAGKL DVARNVLATM ISENLSPTVD 401: TFHAFLEAVN FEKTLEVLGQ MKISDLGPTE ETFLLILGKL FKGKQPENAL KIWAEMDRFE IVANPALYLA TIQGLLSCGW LEKAREIYSE MKSKGFVGNP 501: MLQKLLEEQK VKGVRKSKRM NLQKVGSQEG YKGQRSVDRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)