AT4G04370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 51385 Blast hits to 13710 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 119; Plants - 50626; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:2134060..2136249 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81216.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 729 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIRTSSVLNS TKYFNSHINH LSSHGDHKQV LSTFSSMLAN KLLPDTFTFP SLLKACASLQ RLSFGLSIHQ QVLVNGFSSD FYISSSLVNL YAKFGLLAHA 101: RKVFEEMRER DVVHWTAMIG CYSRAGIVGE ACSLVNEMRF QGIKPGPVTL LEMLSGVLEI TQLQCLHDFA VIYGFDCDIA VMNSMLNLYC KCDHVGDAKD 201: LFDQMEQRDM VSWNTMISGY ASVGNMSEIL KLLYRMRGDG LRPDQQTFGA SLSVSGTMCD LEMGRMLHCQ IVKTGFDVDM HLKTALITMY LKCGKEEASY 301: RVLETIPNKD VVCWTVMISG LMRLGRAEKA LIVFSEMLQS GSDLSSEAIA SVVASCAQLG SFDLGASVHG YVLRHGYTLD TPALNSLITM YAKCGHLDKS 401: LVIFERMNER DLVSWNAIIS GYAQNVDLCK ALLLFEEMKF KTVQQVDSFT VVSLLQACSS AGALPVGKLI HCIVIRSFIR PCSLVDTALV DMYSKCGYLE 501: AAQRCFDSIS WKDVVSWGIL IAGYGFHGKG DIALEIYSEF LHSGMEPNHV IFLAVLSSCS HNGMVQQGLK IFSSMVRDFG VEPNHEHLAC VVDLLCRAKR 601: IEDAFKFYKE NFTRPSIDVL GIILDACRAN GKTEVEDIIC EDMIELKPGD AGHYVKLGHS FAAMKRWDDV SESWNQMRSL GLKKLPGWSK IEMNGKTTTF 701: FMNHTSHSDD TVSLLKLLSR EMMQFGSNN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)