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AT1G62260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mitochondrial editing factor 9
Curator
Summary (TAIR10)
Encodes MITOCHONDRIAL EDITING FACTOR 9 (MEF9), an E subclass PPR protein required for RNA editing.
Computational
Description (TAIR10)
mitochondrial editing factor 9 (MEF9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytidine to uridine editing; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 48341 Blast hits to 14172 proteins in 260 species: Archae - 3; Bacteria - 22; Metazoa - 134; Fungi - 182; Plants - 47365; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).
Protein Annotations
BioGrid:27744eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC000375
EMBL:CP002684EnsemblPlants:AT1G62260EnsemblPlants:AT1G62260.1entrez:842523
Gene3D:1.25.40.10GeneID:842523Genevisible:O04590GO:GO:0005739
GO:GO:0016554Gramene:AT1G62260.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF433
HOGENOM:HOG000237570InParanoid:O04590InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT1G62260OMA:GMQIHQLPaxDb:O04590Pfam:O04590
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812
Pfscan:PS51375PhylomeDB:O04590PIR:B96649PRIDE:O04590
PRO:PR:O04590PROSITE:PS51375ProteinModelPortal:O04590Proteomes:UP000006548
RefSeq:NP_176416.1SMR:O04590STRING:3702.AT1G62260.1SUPFAM:SSF48452
TAIR:AT1G62260tair10-symbols:MEF9TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.66076UniProt:O04590
Coordinates (TAIR10) chr1:-:22997826..22999796
Molecular Weight (calculated) 74173.40 Da
IEP (calculated) 7.30
GRAVY (calculated) -0.16
Length 656 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRSRSVLLI FRKVLYQSSC LKCLLCANSF STSVSSSLGF RATNKELNQM IRSGYIAEAR DIFEKLEARN TVTWNTMISG YVKRREMNQA RKLFDVMPKR
101: DVVTWNTMIS GYVSCGGIRF LEEARKLFDE MPSRDSFSWN TMISGYAKNR RIGEALLLFE KMPERNAVSW SAMITGFCQN GEVDSAVVLF RKMPVKDSSP
201: LCALVAGLIK NERLSEAAWV LGQYGSLVSG REDLVYAYNT LIVGYGQRGQ VEAARCLFDQ IPDLCGDDHG GEFRERFCKN VVSWNSMIKA YLKVGDVVSA
301: RLLFDQMKDR DTISWNTMID GYVHVSRMED AFALFSEMPN RDAHSWNMMV SGYASVGNVE LARHYFEKTP EKHTVSWNSI IAAYEKNKDY KEAVDLFIRM
401: NIEGEKPDPH TLTSLLSAST GLVNLRLGMQ MHQIVVKTVI PDVPVHNALI TMYSRCGEIM ESRRIFDEMK LKREVITWNA MIGGYAFHGN ASEALNLFGS
501: MKSNGIYPSH ITFVSVLNAC AHAGLVDEAK AQFVSMMSVY KIEPQMEHYS SLVNVTSGQG QFEEAMYIIT SMPFEPDKTV WGALLDACRI YNNVGLAHVA
601: AEAMSRLEPE SSTPYVLLYN MYADMGLWDE ASQVRMNMES KRIKKERGSS WVDSST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)