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AT4G04360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.737
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1068)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT2G32580.1); Has 119 Blast hits to 119 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSREeggNOG:KOG1823EMBL:CP002687EnsemblPlants:AT4G04360
EnsemblPlants:AT4G04360.1entrez:825756GeneID:825756GO:GO:0016021
Gramene:AT4G04360.1hmmpanther:PTHR32254InParanoid:F4JGC5InterPro:IPR010471
KEGG:ath:AT4G04360ncoils:CoilOMA:HSFLDCMPaxDb:F4JGC5
Pfam:PF06364PRIDE:F4JGC5Proteomes:UP000006548RefSeq:NP_192345.4
STRING:3702.AT4G04360.1TAIR:AT4G04360TMHMM:TMhelixUniGene:At.27749
UniGene:At.74904UniProt:F4JGC5
Coordinates (TAIR10) chr4:-:2133142..2133866
Molecular Weight (calculated) 19780.40 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.47
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRRQKKTAK VVTVVMGLCI VAYIAGPSLY WHLNETIADS LHSSCPPCVC DCSSQPLLSI PDGLSNHSFL DCMRHEEGSE ESESSFTEMV AEELKLREAQ
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKAEAALDEQ RRLSYMWELR ARQGGWKEGT VASDVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)