AT2G04860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G18485.1); Has 40750 Blast hits to 12883 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 56; Plants - 40225; Viruses - 0; Other Eukaryotes - 416 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1706787..1708865 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76656.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 692 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRITKPITLY RDLSYFHSLL KSCIHGEISS SPITIFRDLL RSSLTPNHFT MSIFLQATTT SFNSFKLQVE QVQTHLTKSG LDRFVYVKTS LLNLYLKKGC 101: VTSAQMLFDE MPERDTVVWN ALICGYSRNG YECDAWKLFI VMLQQGFSPS ATTLVNLLPF CGQCGFVSQG RSVHGVAAKS GLELDSQVKN ALISFYSKCA 201: ELGSAEVLFR EMKDKSTVSW NTMIGAYSQS GLQEEAITVF KNMFEKNVEI SPVTIINLLS AHVSHEPLHC LVVKCGMVND ISVVTSLVCA YSRCGCLVSA 301: ERLYASAKQD SIVGLTSIVS CYAEKGDMDI AVVYFSKTRQ LCMKIDAVAL VGILHGCKKS SHIDIGMSLH GYAIKSGLCT KTLVVNGLIT MYSKFDDVET 401: VLFLFEQLQE TPLISWNSVI SGCVQSGRAS TAFEVFHQMM LTGGLLPDAI TIASLLAGCS QLCCLNLGKE LHGYTLRNNF ENENFVCTAL IDMYAKCGNE 501: VQAESVFKSI KAPCTATWNS MISGYSLSGL QHRALSCYLE MREKGLKPDE ITFLGVLSAC NHGGFVDEGK ICFRAMIKEF GISPTLQHYA LMVGLLGRAC 601: LFTEALYLIW KMDIKPDSAV WGALLSACII HRELEVGEYV ARKMFMLDYK NGGLYVLMSN LYATEAMWDD VVRVRNMMKD NGYDGYLGVS QI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)