AT1G71490.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.986 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G22830.2); Has 41551 Blast hits to 13575 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 81; Plants - 40794; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:26933326..26935371 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75410.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.54 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 681 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSESLFKSL GHLASHGHLH DAFKTFSLLR LQSSSAVSDD LVLHSAASLL SACVDVRAFL AGVQVHAHCI SSGVEYHSVL VPKLVTFYSA FNLHNEAQSI 101: IENSDILHPL PWNVLIASYA KNELFEEVIA AYKRMVSKGI RPDAFTYPSV LKACGETLDV AFGRVVHGSI EVSSYKSSLY VCNALISMYK RFRNMGIARR 201: LFDRMFERDA VSWNAVINCY ASEGMWSEAF ELFDKMWFSG VEVSVITWNI ISGGCLQTGN YVGALGLISR MRNFPTSLDP VAMIIGLKAC SLIGAIRLGK 301: EIHGLAIHSS YDGIDNVRNT LITMYSKCKD LRHALIVFRQ TEENSLCTWN SIISGYAQLN KSEEASHLLR EMLVAGFQPN SITLASILPL CARIANLQHG 401: KEFHCYILRR KCFKDYTMLW NSLVDVYAKS GKIVAAKQVS DLMSKRDEVT YTSLIDGYGN QGEGGVALAL FKEMTRSGIK PDHVTVVAVL SACSHSKLVH 501: EGERLFMKMQ CEYGIRPCLQ HFSCMVDLYG RAGFLAKAKD IIHNMPYKPS GATWATLLNA CHIHGNTQIG KWAAEKLLEM KPENPGYYVL IANMYAAAGS 601: WSKLAEVRTI MRDLGVKKDP GCAWIDTDSG FSLFSVGDTS SPEACNTYPL LDGLNQLMKD NAGYAINKVQ SSDEELLQEM G |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)