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AT2G03380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46134 Blast hits to 13811 proteins in 252 species: Archae - 0; Bacteria - 9; Metazoa - 175; Fungi - 164; Plants - 45093; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006284EMBL:CP002685
EnsemblPlants:AT2G03380EnsemblPlants:AT2G03380.1entrez:814867Gene3D:1.25.40.10
GeneID:814867Genevisible:Q9ZQ74GO:GO:0005739Gramene:AT2G03380.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF51HOGENOM:HOG000237570InParanoid:Q9ZQ74
InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9ZQ74KEGG:ath:AT2G03380
OMA:HFNITPSPaxDb:Q9ZQ74Pfam:PF01535Pfam:PF13041
Pfam:Q9ZQ74Pfscan:PS51375PhylomeDB:Q9ZQ74PIR:G84447
PRIDE:Q9ZQ74PRO:PR:Q9ZQ74PROSITE:PS51375ProteinModelPortal:Q9ZQ74
Proteomes:UP000006548RefSeq:NP_178437.1SMR:Q9ZQ74STRING:3702.AT2G03380.1
TAIR:AT2G03380TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.52621
UniProt:Q9ZQ74
Coordinates (TAIR10) chr2:+:1028292..1030361
Molecular Weight (calculated) 76688.90 Da
IEP (calculated) 7.25
GRAVY (calculated) 0.00
Length 689 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRSITLSPT RRFGFPPRCV SFTTIKELIL TEENDGSSLH YAASSPCFLL LSKCTNIDSL RQSHGVLTGN GLMGDISIAT KLVSLYGFFG YTKDARLVFD
101: QIPEPDFYLW KVMLRCYCLN KESVEVVKLY DLLMKHGFRY DDIVFSKALK ACTELQDLDN GKKIHCQLVK VPSFDNVVLT GLLDMYAKCG EIKSAHKVFN
201: DITLRNVVCW TSMIAGYVKN DLCEEGLVLF NRMRENNVLG NEYTYGTLIM ACTKLSALHQ GKWFHGCLVK SGIELSSCLV TSLLDMYVKC GDISNARRVF
301: NEHSHVDLVM WTAMIVGYTH NGSVNEALSL FQKMKGVEIK PNCVTIASVL SGCGLIENLE LGRSVHGLSI KVGIWDTNVA NALVHMYAKC YQNRDAKYVF
401: EMESEKDIVA WNSIISGFSQ NGSIHEALFL FHRMNSESVT PNGVTVASLF SACASLGSLA VGSSLHAYSV KLGFLASSSV HVGTALLDFY AKCGDPQSAR
501: LIFDTIEEKN TITWSAMIGG YGKQGDTIGS LELFEEMLKK QQKPNESTFT SILSACGHTG MVNEGKKYFS SMYKDYNFTP STKHYTCMVD MLARAGELEQ
601: ALDIIEKMPI QPDVRCFGAF LHGCGMHSRF DLGEIVIKKM LDLHPDDASY YVLVSNLYAS DGRWNQAKEV RNLMKQRGLS KIAGHSTME
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)