AT2G03380.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46134 Blast hits to 13811 proteins in 252 species: Archae - 0; Bacteria - 9; Metazoa - 175; Fungi - 164; Plants - 45093; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:1028292..1030361 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 76688.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.25 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 689 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MLRSITLSPT RRFGFPPRCV SFTTIKELIL TEENDGSSLH YAASSPCFLL LSKCTNIDSL RQSHGVLTGN GLMGDISIAT KLVSLYGFFG YTKDARLVFD 101: QIPEPDFYLW KVMLRCYCLN KESVEVVKLY DLLMKHGFRY DDIVFSKALK ACTELQDLDN GKKIHCQLVK VPSFDNVVLT GLLDMYAKCG EIKSAHKVFN 201: DITLRNVVCW TSMIAGYVKN DLCEEGLVLF NRMRENNVLG NEYTYGTLIM ACTKLSALHQ GKWFHGCLVK SGIELSSCLV TSLLDMYVKC GDISNARRVF 301: NEHSHVDLVM WTAMIVGYTH NGSVNEALSL FQKMKGVEIK PNCVTIASVL SGCGLIENLE LGRSVHGLSI KVGIWDTNVA NALVHMYAKC YQNRDAKYVF 401: EMESEKDIVA WNSIISGFSQ NGSIHEALFL FHRMNSESVT PNGVTVASLF SACASLGSLA VGSSLHAYSV KLGFLASSSV HVGTALLDFY AKCGDPQSAR 501: LIFDTIEEKN TITWSAMIGG YGKQGDTIGS LELFEEMLKK QQKPNESTFT SILSACGHTG MVNEGKKYFS SMYKDYNFTP STKHYTCMVD MLARAGELEQ 601: ALDIIEKMPI QPDVRCFGAF LHGCGMHSRF DLGEIVIKKM LDLHPDDASY YVLVSNLYAS DGRWNQAKEV RNLMKQRGLS KIAGHSTME |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)