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AT4G29560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Fanconi Anaemia group E protein, C-terminal (InterPro:IPR021025); Has 41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEY3eggNOG:ENOG410Y7BYEMBL:AL079344EMBL:AL161575
EMBL:AY150463EMBL:CP002687EnsemblPlants:AT4G29560EnsemblPlants:AT4G29560.1
entrez:829077GeneID:829077Gramene:AT4G29560.1hmmpanther:PTHR32094
HOGENOM:HOG000241919InterPro:IPR021025KEGG:ath:AT4G29560OMA:FGNFLLC
Pfam:PF11510PhylomeDB:Q9SU89PIR:T09919Proteomes:UP000006548
RefSeq:NP_194685.1TAIR:AT4G29560UniGene:At.31908UniProt:Q9SU89
Coordinates (TAIR10) chr4:-:14504421..14505999
Molecular Weight (calculated) 55966.40 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.05
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEWIPLFDI FLKSPSPEAE ASLWLDQASN LFSSSSSAAA PINRSSFVSL LKKQCDQNSS PVTKKVLFIE TLPNMVQSKI LSFLLFEYQR FCVSDLVWLA
101: REMLGSGGNK VVDFWVQRDA HNLLDRIPKP KFEWISNLDL DSADEDSMKQ VFDSVPDWLS EKLGSAGTIL PWLPVSCDDV DSEMLVVDSW NGKEITQIKE
201: DMEEDQREVV HNIDHTMTVG LQAHDHEMAV NLRAQISNFE STSEVLTLCN DIRRLCLEKG KDSLRVLALI EPWNADDETA AVLLSSLHNG SEEEELGWPS
301: HVLCSIVLPK FLSLEKSASR VLMSSTIEFC KIHQRAAEYA LVFPLILRKE GINNFICEVI SRVLKECLHL GQISGFCQKL LCGRTQERRF MFLPCHRDLI
401: SDELTWNEYL FILFQNILIH GIPLSQDSVD CLVSKVQELA ERYSKSLKFG NFLLHFTAKC APMLQAHKYQ LIESVKCTNS LVTKSILSKL NAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)