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AT4G14820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 42785 Blast hits to 14682 proteins in 270 species: Archae - 0; Bacteria - 16; Metazoa - 63; Fungi - 147; Plants - 41807; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL161540EMBL:CP002687
EMBL:Z97337EnsemblPlants:AT4G14820EnsemblPlants:AT4G14820.1entrez:827139
Gene3D:1.25.40.10GeneID:827139Genevisible:O23337GO:GO:0008270
Gramene:AT4G14820.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF581HOGENOM:HOG000237569
InParanoid:O23337InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT4G14820OMA:CEDCHTFPaxDb:O23337Pfam:O23337
Pfam:PF01535Pfam:PF13041Pfam:PF14432Pfscan:PS51375
PhylomeDB:O23337PIR:C71411PRIDE:O23337PRO:PR:O23337
PROSITE:PS51375ProteinModelPortal:O23337Proteomes:UP000006548RefSeq:NP_193218.1
SMR:O23337STRING:3702.AT4G14820.1TAIR:AT4G14820TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.65379UniProt:O23337
Coordinates (TAIR10) chr4:-:8507794..8510038
Molecular Weight (calculated) 82117.50 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.09
Length 722 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLPPPIAST AANTILEKLS FCKSLNHIKQ LHAHILRTVI NHKLNSFLFN LSVSSSSINL SYALNVFSSI PSPPESIVFN PFLRDLSRSS EPRATILFYQ
101: RIRHVGGRLD QFSFLPILKA VSKVSALFEG MELHGVAFKI ATLCDPFVET GFMDMYASCG RINYARNVFD EMSHRDVVTW NTMIERYCRF GLVDEAFKLF
201: EEMKDSNVMP DEMILCNIVS ACGRTGNMRY NRAIYEFLIE NDVRMDTHLL TALVTMYAGA GCMDMAREFF RKMSVRNLFV STAMVSGYSK CGRLDDAQVI
301: FDQTEKKDLV CWTTMISAYV ESDYPQEALR VFEEMCCSGI KPDVVSMFSV ISACANLGIL DKAKWVHSCI HVNGLESELS INNALINMYA KCGGLDATRD
401: VFEKMPRRNV VSWSSMINAL SMHGEASDAL SLFARMKQEN VEPNEVTFVG VLYGCSHSGL VEEGKKIFAS MTDEYNITPK LEHYGCMVDL FGRANLLREA
501: LEVIESMPVA SNVVIWGSLM SACRIHGELE LGKFAAKRIL ELEPDHDGAL VLMSNIYARE QRWEDVRNIR RVMEEKNVFK EKGLSRIDQN GKSHEFLIGD
601: KRHKQSNEIY AKLDEVVSKL KLAGYVPDCG SVLVDVEEEE KKDLVLWHSE KLALCFGLMN EEKEEEKDSC GVIRIVKNLR VCEDCHLFFK LVSKVYEREI
701: IVRDRTRFHC YKNGLCSCRD YW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)