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AT1G03540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (endoplasmic reticulum marker)

At1g03540-GFP
(full-length)
endoplasmic reticulum marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At1g03540-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 43035 Blast hits to 14042 proteins in 228 species: Archae - 0; Bacteria - 19; Metazoa - 59; Fungi - 97; Plants - 42229; Viruses - 0; Other Eukaryotes - 631 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC002560EMBL:CP002684
EMBL:DQ446225EnsemblPlants:AT1G03540EnsemblPlants:AT1G03540.1entrez:839466
Gene3D:1.25.40.10GeneID:839466Genevisible:Q9LR69Gramene:AT1G03540.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF328HOGENOM:HOG000241954InParanoid:Q9LR69
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G03540OMA:VDMYGHA
PaxDb:Q9LR69Pfam:PF01535Pfam:PF13041Pfam:Q9LR69
Pfscan:PS51375PhylomeDB:Q9LR69PIR:T00904PRIDE:Q9LR69
PRO:PR:Q9LR69PROSITE:PS51375ProteinModelPortal:Q9LR69Proteomes:UP000006548
RefSeq:NP_171853.1SMR:Q9LR69STRING:3702.AT1G03540.1SUPFAM:SSF48452
TAIR:AT1G03540TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.51470
UniProt:Q9LR69
Coordinates (TAIR10) chr1:+:883782..885611
Molecular Weight (calculated) 67405.80 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.04
Length 609 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLIILKRHF SQHASLCLTP SISSSAPTKQ SRILELCKLG QLTEAIRILN STHSSEIPAT PKLYASLLQT CNKVFSFIHG IQFHAHVVKS GLETDRNVGN
101: SLLSLYFKLG PGMRETRRVF DGRFVKDAIS WTSMMSGYVT GKEHVKALEV FVEMVSFGLD ANEFTLSSAV KACSELGEVR LGRCFHGVVI THGFEWNHFI
201: SSTLAYLYGV NREPVDARRV FDEMPEPDVI CWTAVLSAFS KNDLYEEALG LFYAMHRGKG LVPDGSTFGT VLTACGNLRR LKQGKEIHGK LITNGIGSNV
301: VVESSLLDMY GKCGSVREAR QVFNGMSKKN SVSWSALLGG YCQNGEHEKA IEIFREMEEK DLYCFGTVLK ACAGLAAVRL GKEIHGQYVR RGCFGNVIVE
401: SALIDLYGKS GCIDSASRVY SKMSIRNMIT WNAMLSALAQ NGRGEEAVSF FNDMVKKGIK PDYISFIAIL TACGHTGMVD EGRNYFVLMA KSYGIKPGTE
501: HYSCMIDLLG RAGLFEEAEN LLERAECRND ASLWGVLLGP CAANADASRV AERIAKRMME LEPKYHMSYV LLSNMYKAIG RHGDALNIRK LMVRRGVAKT
601: VGQSWIDAH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)