AT1G03540.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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FP Images |
Arabidopsis cell culture (endoplasmic reticulum marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 43035 Blast hits to 14042 proteins in 228 species: Archae - 0; Bacteria - 19; Metazoa - 59; Fungi - 97; Plants - 42229; Viruses - 0; Other Eukaryotes - 631 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:883782..885611 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 67405.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.55 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 609 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNLIILKRHF SQHASLCLTP SISSSAPTKQ SRILELCKLG QLTEAIRILN STHSSEIPAT PKLYASLLQT CNKVFSFIHG IQFHAHVVKS GLETDRNVGN 101: SLLSLYFKLG PGMRETRRVF DGRFVKDAIS WTSMMSGYVT GKEHVKALEV FVEMVSFGLD ANEFTLSSAV KACSELGEVR LGRCFHGVVI THGFEWNHFI 201: SSTLAYLYGV NREPVDARRV FDEMPEPDVI CWTAVLSAFS KNDLYEEALG LFYAMHRGKG LVPDGSTFGT VLTACGNLRR LKQGKEIHGK LITNGIGSNV 301: VVESSLLDMY GKCGSVREAR QVFNGMSKKN SVSWSALLGG YCQNGEHEKA IEIFREMEEK DLYCFGTVLK ACAGLAAVRL GKEIHGQYVR RGCFGNVIVE 401: SALIDLYGKS GCIDSASRVY SKMSIRNMIT WNAMLSALAQ NGRGEEAVSF FNDMVKKGIK PDYISFIAIL TACGHTGMVD EGRNYFVLMA KSYGIKPGTE 501: HYSCMIDLLG RAGLFEEAEN LLERAECRND ASLWGVLLGP CAANADASRV AERIAKRMME LEPKYHMSYV LLSNMYKAIG RHGDALNIRK LMVRRGVAKT 601: VGQSWIDAH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)