AT4G28080.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.992 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01320.2); Has 11837 Blast hits to 4947 proteins in 554 species: Archae - 95; Bacteria - 3252; Metazoa - 4987; Fungi - 1783; Plants - 350; Viruses - 14; Other Eukaryotes - 1356 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:13948993..13957840 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 199126.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1819 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPKAGKTKP HKSKGEKKKK EEKVLPTVIE ISVETPDESQ VTLKGISTDR ILDVRKLLAV HVQTCHFTNF SLSHQVRGTK LKDSVDIVSL KPCHLTIVEE 0101: DYTEEQATAH IRRLLDIVAC TTAFGPSKPP VSRTLPKDSE KKESGSTDGD SPTEKDAGDS NSGLSPKPKE SEKKSVGACE AQSAEGAAKS DIDMCPPTRL 0201: GQFYEFFSFS YLTPPIQYIR RSVRPSKEDK GLDDLFQIDI KVSSGKPFTV VASRTGFYPP GKQQLLCHSL VELLQQISRP FDAAYDALMK AFIEHNKFGN 0301: LPYGFRANTW VVPPVVADSP STFPSLPVED ETWGGDGGGV GRSGKYDKRK WAKEFAILAA MPCKTPEERQ VRDRKAFLLH SLFVDVSVFK AVEIIKKIVE 0401: NNQCSLKDPA ALGFHEERIG DLIVRVARDD PDASAKLDRK SDGTQVLEIS QEELAQRNLL KGITADESAT VHDTSTLGVV VVRHCGCTAI VKVASEFKLN 0501: DGHILQDIDI EDQSEGGANA LNVNSLRTLL HKSSTPSSLA QRSPNADSEQ IRVAKSLVRK VIEDSLKKLE IEPSRYSKPI RWELGACWVQ HLQNQASSKS 0601: ESKKTEDPKP EPAVKGLGKQ GALLKEIKRK IDVKANKTEQ GKEAPANDTD NTSETEDQKE LEKQNEEIEK MWKELVTETA YQRLKESETG FHLKSPKELI 0701: EMARKYYTDT ALPKLVADFG SLELSPVDGR TLTDFMHTRG LQMHSLGRVV ELAEKLPHVQ SLCVHEMIVR AYKHILQAVV AAVENTADVA TSIATCLNVL 0801: LGTPSDTESV YDEKIKWTWV ETFISKRFGW DWKHEGCQEL RKFSILRGLS HKVGLELVPK DYEMDTSYPF KKFDIISMVP VYKHVACSSA DGRTLLESSK 0901: TSLDKGKLED AVNYGTKALA KLVAVCGPYH RMTAGAYSLL AVVLYHTGDF NQATIYQQKA LDINERELGL DHPDTMKSYG DLAVFYYRLQ HTELALKYVN 1001: RALYLLHLTC GPSHPNTAAT YINVAMMEEG MKNAHVALRY LHEALKCNQR LLGADHIQTA ASYHAIAIAL SLMDAYSLSV QHEQTTLQIL QAKLGPEDLR 1101: TQDAAAWLEY FESKALEQQE AARNGTPKPD ASISSKGHLS VSDLLDYITP DSGIKARDAQ RKARPKVKGK PGQSPGPVSE ENQKDDEILS PAHLTGESSS 1201: DKENKSETKS EEKKVENFDL EQSKPQDQLK LVKPEATVHE DDDSDEGWQE AVPKNRFSSG RRTRPSLAKL NTNFMNVTQQ PSRSRGKSTN FTSPRTSSNE 1301: LSISVAGSTS SPASKMFVKS PLNKKQNNSS VVGERPVNDK SALASSACTE QINKPTPMLS PVSVKAGKLF SYKEVALAPP GTIVKIVAEQ LPEETKAPQN 1401: LDAAKIAVDG PEKVNAQDAE SENKHVATET EAENTDCNEQ GRVVVGGSEL TSSPKEIKNV EVEKAAEKAF PIETAVSNAR PGKSKSAQMA EDSDTCLLNK 1501: SPTANDSNGS ESVIGVKLQK DLCDAELKTV DGETENLPNG DSSPKSSVAA DGEKQDACEA QKEMSKKLSA SAPPYTPTTI PIFGSIAVPG FKDHGGILPS 1601: PLNMPPMLPI NHVRRSTPHQ SVTARVPYGP RLSGGGYNRS GNRVPRNKPS FPNSTESNGE ANQFNGPRIM NPHAAEFIPS QPWVSNGYPV SPNGYLASPN 1701: GAEITQNGYP LSPVAGGYPC NMSVTQPQDG LVSEELPGAG SSEEKSGSEE ESNNDKNAGE DDEAVGQETT DTPENGHSTV GEVETTSHET CDEKNGERQG 1801: GKCWGDYSDN EIEQIEVTS |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)