AT4G34830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes MRL1, a conserved pentatricopeptide repeat protein, required for stabilization of rbcL mRNA. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MATURATION OF RBCL 1 (MRL1); INVOLVED IN: mRNA stabilization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 45662 Blast hits to 13867 proteins in 283 species: Archae - 3; Bacteria - 43; Metazoa - 608; Fungi - 635; Plants - 42548; Viruses - 0; Other Eukaryotes - 1825 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16599976..16605994 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119778.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.93 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1089 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEVTSTTFIS TTRSSKYLTL TSYSPVILPA STLRRDFLGC CHSLRPSPHL RTRAGKRNSR RSSIRSPRLV VRASIDSGLI LIVVAVTAFS AIAFAYCQST 0101: FRKRKSSDEV ATVHGGKNSA ENRREIHGDI HEGNPVEINV GFRKVEEESV NLLEEEKAHQ IHEVAVMDYD SVSAEDSQFA VASVTTVATA HTLIDESFSS 0201: SIVNGSVALE SATFGVKTPE KQVGNSEDQK GLEHDFSQAV VGIHSIASPQ VVDDTRALEY EYNGLLQKPL EYSIFAESKR EEIHTFYGSN HSSAKSSRLP 0301: SLKAVSPAVT SATNSLFLDH KNNGVIDTQF PGQSSGQATG DVQEENLVAH SNGGVSHIRK DVKGDWKFPS DGKHVGHQID ESMPQFPARN FELHNSNGRS 0401: PETSDAYNRL LRDGRIKDCI SLLEDLDQRD LLDMDKIYHA SFFKACKKQR AVKEAFRFTK LILNPTMSTF NMLMSVCASS QDIEGARGVL RLVQESGMTA 0501: DCKLYTTLIS SCAKSGKVDA MFEVFHQMSN SGVEANLHTF GALIDGCARA GQVAKAFGAY GILRSKNVKP DRVVFNALIS ACGQSGAVDR AFDVLAEMKA 0601: ETHPIDPDHI SIGALMKACC NAGQVERAKE VYQMIHKYGI RGTPEVYTIA VNSCSKSGDW DFACSIYKDM KEKDVTPDEV FFSALIDVAG HAKMLDEAFG 0701: ILQDAKSQGI RLGTISYSSL MGACCNAKDW KKALELYEKI KSIKLRPTIS TMNALITALC EGNQLPKAME YLDEIKTLGL KPNTITYSML MLASERKDDF 0801: EVSFKLLSQA KGDGVSPNLI MCRCITSLCK RRFEKACAGG EPVVSFKSGR PQIENKWTSM ALMVYRETIS GGTVPTTEVV SQVLGCLQLP HDAALRDRLI 0901: STLGINISSQ KQHNIFPLVD GFGEYDPRAF SLLEEATSLG VLPSVSFNKI PLFFDTTELP KNVAEVYLLT IFKGLKHRLA AGAKIPHINL IISIQEKEIR 1001: TPEGEKTIDL TGRVGQEIGA LLRRLDIPYH RKDSRLRING VSLKNWFQPK LDSPFSGGKP GDLRSSQVPL GNQISRQQRS IRLGNLSLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)