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AT1G18270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.900
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ketose-bisphosphate aldolase class-II family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), Protein of unknown function, DUF1537 (InterPro:IPR010737), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1); Has 34046 Blast hits to 22505 proteins in 2700 species: Archae - 264; Bacteria - 21742; Metazoa - 568; Fungi - 820; Plants - 423; Viruses - 1; Other Eukaryotes - 10228 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G18270-MONOMERBioCyc:ARA:GQT-838-MONOMEReggNOG:COG0191eggNOG:COG2084
eggNOG:COG3395eggNOG:KOG0409eggNOG:KOG4153EMBL:AY072188
EMBL:AY133875EMBL:CP002684EnsemblPlants:AT1G18270EnsemblPlants:AT1G18270.1
entrez:838407ExpressionAtlas:Q8VYC5Gene3D:1.10.1040.10Gene3D:3.20.20.70
Gene3D:3.40.50.720GeneID:838407GO:GO:0004616GO:GO:0005975
GO:GO:0008270GO:GO:0016832GO:GO:0051287Gramene:AT1G18270.1
gramene_pathway:4.1.2.13gramene_pathway:CALVIN-PWYgramene_pathway:GLYCOLYSISgramene_pathway:PWY-1042
gramene_pathway:PWYQT-4428gramene_plant_reactome:1119519gramene_plant_reactome:6877239hmmpanther:PTHR22981
hmmpanther:PTHR22981:SF27HOGENOM:HOG000030508InterPro:IPR000771InterPro:IPR002204
InterPro:IPR006115InterPro:IPR008927InterPro:IPR010737InterPro:IPR013328
InterPro:IPR013785InterPro:IPR016040InterPro:IPR029154InterPro:IPR031475
Pfam:PF01116Pfam:PF03446Pfam:PF07005Pfam:PF14833
Pfam:PF17042PhylomeDB:Q8VYC5PROSITE:PS00895Proteomes:UP000006548
RefSeq:NP_173263.2scanprosite:PS00895SMR:Q8VYC5STRING:3702.AT1G18270.3
SUPFAM:0051451SUPFAM:SSF48179SUPFAM:SSF51569SUPFAM:SSF51735
TAIR:AT1G18270TIGRfam:TIGR00167TIGRFAMs:TIGR00167UniGene:At.24051
UniProt:Q8VYC5
Coordinates (TAIR10) chr1:-:6283634..6293772
Molecular Weight (calculated) 147051.00 Da
IEP (calculated) 5.63
GRAVY (calculated) 0.06
Length 1373 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSGVVGFVGL DSFSFELASS LLRSGFKVQA FEISTELVEK FIELGGHKCD SPADVGKAAA AVVVVLSHPD QIQDVIFGDE GVMKGLQKDA VLLLSSTIST
0101: LQLQKLEKQL TEKREQIFVV DAYVLKGMSE LLDGKLMIIA SGRSDSITRA QPYLTAMCQN LYTFEGEIGA GSKVKMVNEL LEGIHLVAAV EAISLGSQAG
0201: VHPWILYDII SNAAGNSWIY KNHIPLLLKD DIEGRFLDVL SQNLAIVEDK AKSLPFPVPL LAVARQQLIS GISQMQGDDT ATSLAKISEK VLGVGILEAA
0301: NRELYKPEDL AKEITTQAKP VNRIGFIGLG AMGFGMAAHL LKSNFSVCGY DVYKPTLVRF ENAGGLAANS PAEVTKDVDV LVIMVTNEVQ AEDVLYGHLG
0401: AVEAIPSGAT VVLASTVSPA FVSQLERRLE NEGKDLKLVD APVSGGVKRA AMGELTIMAS GTDEALKSAG LVLSALSEKL YVIKGGCGAG SGVKMVNQLL
0501: AGVHIASAAE AMAFGARLGL NTRKLFNVIS NSGGTSWMFE NRVPHMLDND YTPYSALDIF VKDLGIVTRE GSSRKVPLHI STVAHQLFLA GSAAGWGRID
0601: DAGVVKVYET LAGIKVEGRL PVLKKQDLLK SLPAEWPSDP TTDIHRLNMG NSKTLVVLDD DPTGTQTVHD VEVLTEWSVE SISEQFRKKP ACFFILTNSR
0701: SLSPEKASEL IKDICSNLCA ASKEVGNADY TIVLRGDSTL RGHFPQEADA AVSILGEMDA WIICPFFLQG GRYTIDDVHY VADSDRLVPA GETEFAKDAS
0801: FGYKSSNLRE WVEEKTAGVI PANSVQSISI QLLRKGGPDA VCEFLCSLKK GSTCIVNAAS ERDMAVFAAG MIQAELKGRS FLCRTAASFV SALIGIIPKD
0901: PVLPKDFESN KESSGALIVV GSYVPKTTKQ VEELQSQHNQ NLRSIEISVE KVALKSSEVR DEEIRRAVEM ADAFLRAGRE TLIMSSRELI TGKTSSESLD
1001: INSKVSSALV EVVSQISTRP RYILAKGGIT SSDTATKALK ARRALVIGQA LAGVPVWKLG PESRHPGVPY IVFPGNVGNS TALAEVVKSW SVVAGRSTKE
1101: LLLNAEKGGY AVGAFNVYNL EGIEAVVAAA EEENSPAILQ VHPGAFKQGG IPLVSCCISA AEQARVPISV HFDHGTTKHE LLEALELGLD SVMVDGSHLS
1201: FTENLSYTKS ITELARSKNI MVEAELGRLS GTEDGLTVED YEAKLTNVNQ AQEFMETGID ALAVCIGNVH GKYPKSGPNL KLDLLKELHA LSSKKGVFLV
1301: LHGASGLSEN LIKECIENGV RKFNVNTEVR TAYMEALSSG KKTDIVDVMS ATKAAMKAVI ADKIRLFGSA GKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)