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AT4G39660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22540835 (2012): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:18385124 (2008): mitochondrion
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alanine:glyoxylate aminotransferase 2
Curator
Summary (TAIR10)
alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,
Computational
Description (TAIR10)
alanine:glyoxylate aminotransferase 2 (AGT2); FUNCTIONS IN: zinc ion binding, alanine-glyoxylate transaminase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: PYRIMIDINE 4 (TAIR:AT3G08860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G39660-MONOMERBioGrid:15400EC:2.6.1.44eggNOG:COG0160
eggNOG:KOG1404EMBL:AF166351EMBL:AL022605EMBL:AL161595
EMBL:AY054264EMBL:BT002306EMBL:CP002687EnsemblPlants:AT4G39660
EnsemblPlants:AT4G39660.1entrez:830120ExpressionAtlas:Q940M2Gene3D:3.40.640.10
Gene3D:3.90.1150.10GeneID:830120Genevisible:Q940M2GO:GO:0005739
GO:GO:0005774GO:GO:0008270GO:GO:0008453GO:GO:0009853
GO:GO:0016020GO:GO:0019544GO:GO:0030170GO:GO:0042802
GO:GO:0046686Gramene:AT4G39660.1hmmpanther:PTHR11986hmmpanther:PTHR11986:SF58
HOGENOM:HOG000020206InParanoid:Q940M2InterPro:IPR005814InterPro:IPR015421
InterPro:IPR015422InterPro:IPR015424KEGG:ath:AT4G39660KO:K00827
OMA:LTSKMPGPANTHER:PTHR11986PaxDb:Q940M2Pfam:PF00202
Pfam:Q940M2PhylomeDB:Q940M2PIR:T05003PRIDE:Q940M2
PRO:PR:Q940M2PROSITE:PS00600ProteinModelPortal:Q940M2Proteomes:UP000006548
Reactome:R-ATH-389661RefSeq:NP_568064.1scanprosite:PS00600SMR:Q940M2
STRING:3702.AT4G39660.1SUPFAM:SSF53383TAIR:AT4G39660tair10-symbols:AGT2
UniGene:At.22488UniProt:Q0WUN0UniProt:Q940M2
Coordinates (TAIR10) chr4:+:18406797..18409262
Molecular Weight (calculated) 51955.60 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.12
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MALQRQLLKR ATSDIYHRRA ISLLRTDFST SPSIADAPPH IPPFVHQPRP YKGPSADEVL QKRKKFLGPS LFHYYQKPLN IVEGKMQYLY DESGRRYLDA
101: FAGIVTVSCG HCHPDILNAI TEQSKLLQHA TTIYLHHAIG DFAEALAAKM PGNLKVVYFV NSGSEANELA MMMARLYTGS LEMISLRNAY HGGSSNTIGL
201: TALNTWKYPL PQGEIHHVVN PDPYRGVFGS DGSLYAKDVH DHIEYGTSGK VAGFIAETIQ GVGGAVELAP GYLKSVYEIV RNAGGVCIAD EVQTGFGRTG
301: SHYWGFQTQD VVPDIVTMAK GIGNGLPLGA VVTTPEIASV LASKILFNTF GGNPVCSAGG LAVLNVIDKE KRQEHCAEVG SHLIQRLKDV QKRHDIIGDV
401: RGRGLMVGIE LVSDRKDKTP AKAETSVLFE QLRELGILVG KGGLHGNVFR IKPPMCFTKD DADFLVDALD YSISRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)