suba logo
AT5G63620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GroES-like zinc-binding alcohol dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT1G64710.1); Has 51624 Blast hits to 51478 proteins in 3352 species: Archae - 890; Bacteria - 33556; Metazoa - 1876; Fungi - 3906; Plants - 3943; Viruses - 3; Other Eukaryotes - 7450 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G63620-MONOMEReggNOG:COG1062eggNOG:KOG0022EMBL:AY056783
EMBL:BT001139EMBL:CP002688EnsemblPlants:AT5G63620EnsemblPlants:AT5G63620.1
entrez:836482ExpressionAtlas:Q93ZM6Gene3D:3.40.50.720Gene3D:3.90.180.10
GeneID:836482GO:GO:0008270GO:GO:0016491GO:GO:0050897
Gramene:AT5G63620.1gramene_plant_reactome:1119309gramene_plant_reactome:6873988hmmpanther:PTHR11695
hmmpanther:PTHR11695:SF555InterPro:IPR002085InterPro:IPR011032InterPro:IPR013149
InterPro:IPR013154InterPro:IPR016040InterPro:IPR020843OMA:TGKSHVC
PANTHER:PTHR11695Pfam:PF00107Pfam:PF08240PhylomeDB:Q93ZM6
Proteomes:UP000006548RefSeq:NP_851257.1SMART:SM00829SMR:Q93ZM6
STRING:3702.AT5G63620.1SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT5G63620
UniGene:At.8693UniProt:Q93ZM6
Coordinates (TAIR10) chr5:-:25466380..25468296
Molecular Weight (calculated) 45500.00 Da
IEP (calculated) 7.71
GRAVY (calculated) 0.02
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFAPILRRA SAVKNLFSLT RLAVGSALST RSLQTGASGD DSQSMGGYHV SPGGFMRGAV YREPNKPLTI EEFHIPRPKS NEILIKTKAC GVCHSDLHVM
101: KGEIPFASPC VIGHEITGEV VEHGPLTDHK IINRFPIGSR VVGAFIMPCG TCSYCAKGHD DLCEDFFAYN RAKGTLYDGE TRLFLRHDDS PVYMYSMGGM
201: AEYCVTPAHG LAPLPESLPY SESAILGCAV FTAYGAMAHA AEIRPGDSIA VIGIGGVGSS CLQIARAFGA SDIIAVDVQD DKLQKAKTLG ATHIVNAAKE
301: DAVERIREIT GGMGVDVAVE ALGKPQTFMQ CTLSVKDGGK AVMIGLSQAG SVGEIDINRL VRRKIKVIGS YGGRARQDLP KVVKLAESGI FNLTNAVSSK
401: YKFEDAGKAF QDLNEGKIVS RGVVEIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)