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AT3G56140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF399 and DUF3411)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF399 and DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT2G40400.2); Has 538 Blast hits to 538 proteins in 131 species: Archae - 0; Bacteria - 182; Metazoa - 33; Fungi - 6; Plants - 279; Viruses - 6; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKZ2eggNOG:ENOG410YH33EMBL:AK227110EMBL:AL163763
EMBL:AY093111EMBL:BT010340EMBL:CP002686EnsemblPlants:AT3G56140
EnsemblPlants:AT3G56140.1entrez:824780GeneID:824780Genevisible:Q8RWG3
GO:GO:0007275GO:GO:0009507GO:GO:0016021GO:GO:0031969
Gramene:AT3G56140.1hmmpanther:PTHR31620hmmpanther:PTHR31620:SF2HOGENOM:HOG000082965
InParanoid:Q8RWG3InterPro:IPR007314InterPro:IPR021825KEGG:ath:AT3G56140
ncoils:CoilOMA:YADETTGPaxDb:Q8RWG3Pfam:PF04187
Pfam:PF11891PhylomeDB:Q8RWG3PIR:T47731PRIDE:Q8RWG3
PRO:PR:Q8RWG3ProteinModelPortal:Q8RWG3Proteomes:UP000006548RefSeq:NP_191173.2
SUPFAM:SSF159501TAIR:AT3G56140UniGene:At.34962UniProt:Q8RWG3
Coordinates (TAIR10) chr3:+:20829407..20832669
Molecular Weight (calculated) 82256.40 Da
IEP (calculated) 7.40
GRAVY (calculated) -0.21
Length 745 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)