AT2G35800.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : mitochondrial substrate carrier family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate carrier (InterPro:IPR001993), EF-hand-like domain (InterPro:IPR011992), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G26360.1); Has 17569 Blast hits to 12630 proteins in 423 species: Archae - 0; Bacteria - 12; Metazoa - 7266; Fungi - 5152; Plants - 3396; Viruses - 0; Other Eukaryotes - 1743 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:15044437..15048352 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 90631.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 823 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVSKNDHIET LFNSIQLVKD VVLLPIELGV KKAARDIENC WISKERDLGL VFRSSGRNRK KRIVATPEFD DNATNNVQCV VVTDERKKGL SIKKIPVKSL 101: FGMFSPNLVS EKLSRGNDVV VAKKDKSLEK KDDDSCTDCF KFAMTWSLLV SGFVHAFPIP FKIGKKRIHK MGDDENSLRK HGLKSKAAFV SRKEVRCQSV 201: ESVEKEGNPF SIECAVGFVV EMLAQNLQKL DQFIQDSSEN ESCCSKEASS NDSPLIFNIW EARKLDVNGF LGNLMFARVG DVASGIGGLT SHISEDGDES 301: NVSTAGKEES AVDSPQNLAT GLLSIPLSNV ERLKSTLSTI SLTELIELLP QLGRPSRDHP DKKKLISVQD FFRYTESEGR RFFEELDRDG DGKVTLEDLE 401: IAMRRRKLPR RYAKEFMRRA RSHLFSKSFG WKQFLSLMEQ KEPTILRAYT SLCLTKSGTL KKSEILASLN NAGLPANEEN AIAMMRFLKA DTEESISYGH 501: FRNFMVLLPY ERLQDDPRNI WFEAATVVAV APPVALPAGD VLKSALAGGL ASALSTSLMH PIDTIKTRVQ ASTLSFPEVI AKLPEIGVRG VYRGSIPAIL 601: GQFSSHGLRT GIFEASKLVL INFAPNLPEI QVQSIASFCS TLLGTAVRIP CEVLKQRLQA GMFNNVGEAI VGTWKQDGPS GFFRGTGATL CREVPLYVVG 701: MGLYAESKKM VAQALGRELE AWETIAVGAV SGGIAAVVTT PFDVMKTRMM TATPGRPISM SMVVVSILRN EGPLGLFKGA VPRFFWVAPL GAMNFAGYEL 801: AKKAMQKNED AVLADQLGQK KLC |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)