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AT5G19820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2734 (emb2734); FUNCTIONS IN: lyase activity, binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cell wall, phycobilisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G27640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQAJeggNOG:KOG2171EMBL:AY035044EMBL:AY051083
EMBL:CP002688EnsemblPlants:AT5G19820EnsemblPlants:AT5G19820.1entrez:832102
Gene3D:1.25.10.10GeneID:832102GO:GO:0000059GO:GO:0000060
GO:GO:0005618GO:GO:0005829GO:GO:0006607GO:GO:0006610
GO:GO:0008139GO:GO:0008565GO:GO:0031965GO:GO:0034399
Gramene:AT5G19820.1hmmpanther:PTHR10527hmmpanther:PTHR10527:SF29HOGENOM:HOG000209725
InterPro:IPR000357InterPro:IPR011989InterPro:IPR016024InterPro:IPR021133
KEGG:ath:AT5G19820OMA:DTNLNNMPfam:PF02985Pfam:PF13646
Pfscan:PS50077PhylomeDB:Q93VS8ProMEX:Q93VS8PROSITE:PS50077
Proteomes:UP000006548RefSeq:NP_197483.1SMR:Q93VS8STRING:3702.AT5G19820.1
SUPFAM:SSF48371TAIR:AT5G19820tair10-symbols:emb2734UniGene:At.19168
UniGene:At.67021UniProt:Q93VS8
Coordinates (TAIR10) chr5:-:6695731..6701247
Molecular Weight (calculated) 123832.00 Da
IEP (calculated) 4.50
GRAVY (calculated) -0.11
Length 1116 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASEANQLQQ AQLAMVLGSD SAPFETLISH LMSSSNEQRS SAESLFNLAK QSNPDTLSLK LAHLLQLSPH PEGRAMAAVL LRKLLTRDDA YLWPRLSLST
0101: QSSLKSSMLY CIQHEEAKSI SKKICDTVSE LASGILPENG WPELLPFVFQ CVTSVTPKLQ ESAFLILAQL SQYVGETLTP HIKELHGVFL QCLSSNSASS
0201: DVKIAALNAV ISFVQCLANS TERDRFQDVL PAMIRTLTES LNNGNEATAQ EALELLIELA GTEPRFLRRQ LVDIVGSMLQ IAEADSLEES TRHLAIEFLV
0301: TLAEARERAP GMVRKLPQFI DRLFAVLMKM LEDIEDDPAW YSAETEDEDA GETSNYSMGQ ECLDRLAISL GGNTIVPVAY QQFSAYLAAS EWQKHHASLI
0401: ALAQIAEGCS KVMIKNLDQV VSMVLSQFQS PHPRVRWAAI NAIGQLSTDL GPDLQNQHHE RVLPALAAAM DDFQNPRVQA HAASAVLNFS ENCTPEILSP
0501: YLDGVVSKLL VLLQNGKQMV QEGALTALAS VADSSQEHFQ KYYDTVMPYL KTILMNATDK SKRMLRAKSM ECISLVGMAV GKDRFKEDAR QVMEVLMSLQ
0601: GSQMEADDPI TSYMLQAWAR LCKCLGQDFL PYMKVVMPPL LQSAQLKPDV TITSADSEDE AEDSDDESME TIILGDKRIG IKTSVLEEKA TACNMLCCYA
0701: DELKEGFFPW IDQVAPTLVP LLKFYFHEEV RRAAVSAMPE LMRSAKLAIE KGESQGRDLS YLKQLSDYII PAMLEALHKE PDTEICVSML EAINECLQIS
0801: GNLLDEGKIR SIVDEIKQVM TASSSRKRER GERAHAEDFD AEEGELIKEE NEQEEEIFDQ VGEILGTLVK TFKASFLPFF DELSSYLTPM WGRDKTAEER
0901: RIAICIFDDV AEQCREAAFK YYDTYLPFVL EACNDESPEV RQAAVYGLGV CAEFGGSVFK PLIGEALSRL NVVIQLPNAR QSENAMAYDN AVSAVGKICQ
1001: FHRDSIDSSQ VLPAWLNCLP ISNDVLEAKV VHDQLCSMVE RQDVDLLGPN NQHLPKILIV FAEVLTGKDV VTQETAGRMI NILRQLQQTL PPSALASTWS
1101: TLKPEQQLAL QSMLSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)