AT5G19820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2734 (emb2734); FUNCTIONS IN: lyase activity, binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cell wall, phycobilisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G27640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6695731..6701247 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 123832.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.50 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1116 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASEANQLQQ AQLAMVLGSD SAPFETLISH LMSSSNEQRS SAESLFNLAK QSNPDTLSLK LAHLLQLSPH PEGRAMAAVL LRKLLTRDDA YLWPRLSLST 0101: QSSLKSSMLY CIQHEEAKSI SKKICDTVSE LASGILPENG WPELLPFVFQ CVTSVTPKLQ ESAFLILAQL SQYVGETLTP HIKELHGVFL QCLSSNSASS 0201: DVKIAALNAV ISFVQCLANS TERDRFQDVL PAMIRTLTES LNNGNEATAQ EALELLIELA GTEPRFLRRQ LVDIVGSMLQ IAEADSLEES TRHLAIEFLV 0301: TLAEARERAP GMVRKLPQFI DRLFAVLMKM LEDIEDDPAW YSAETEDEDA GETSNYSMGQ ECLDRLAISL GGNTIVPVAY QQFSAYLAAS EWQKHHASLI 0401: ALAQIAEGCS KVMIKNLDQV VSMVLSQFQS PHPRVRWAAI NAIGQLSTDL GPDLQNQHHE RVLPALAAAM DDFQNPRVQA HAASAVLNFS ENCTPEILSP 0501: YLDGVVSKLL VLLQNGKQMV QEGALTALAS VADSSQEHFQ KYYDTVMPYL KTILMNATDK SKRMLRAKSM ECISLVGMAV GKDRFKEDAR QVMEVLMSLQ 0601: GSQMEADDPI TSYMLQAWAR LCKCLGQDFL PYMKVVMPPL LQSAQLKPDV TITSADSEDE AEDSDDESME TIILGDKRIG IKTSVLEEKA TACNMLCCYA 0701: DELKEGFFPW IDQVAPTLVP LLKFYFHEEV RRAAVSAMPE LMRSAKLAIE KGESQGRDLS YLKQLSDYII PAMLEALHKE PDTEICVSML EAINECLQIS 0801: GNLLDEGKIR SIVDEIKQVM TASSSRKRER GERAHAEDFD AEEGELIKEE NEQEEEIFDQ VGEILGTLVK TFKASFLPFF DELSSYLTPM WGRDKTAEER 0901: RIAICIFDDV AEQCREAAFK YYDTYLPFVL EACNDESPEV RQAAVYGLGV CAEFGGSVFK PLIGEALSRL NVVIQLPNAR QSENAMAYDN AVSAVGKICQ 1001: FHRDSIDSSQ VLPAWLNCLP ISNDVLEAKV VHDQLCSMVE RQDVDLLGPN NQHLPKILIV FAEVLTGKDV VTQETAGRMI NILRQLQQTL PPSALASTWS 1101: TLKPEQQLAL QSMLSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)