AT3G59020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, importin-alpha export receptor activity, binding; INVOLVED IN: intracellular protein transport, cell proliferation, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), CAS/CSE, C-terminal (InterPro:IPR005043), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Exportin/Importin, Cse1-like (InterPro:IPR013713); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G31660.1); Has 8110 Blast hits to 5178 proteins in 456 species: Archae - 41; Bacteria - 603; Metazoa - 2454; Fungi - 1580; Plants - 679; Viruses - 179; Other Eukaryotes - 2574 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21810973..21817418 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117646.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.50 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1029 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDLPSLALIV GAAAFSPNPD ERRAAEQSLN QLQHTPQHLI RILQIIVDGG SDLSVRQSAS IHFKNFIAKH WEPHSGDQNI ILPSDKNVVR NQILVFVSQV 0101: PPILRVQMGE CLKTIIYADY PEQWPELLDW VKQNLQKPQV YGALFVLRIL SSKYEFKSDE DRAPIHRVVE ETFPHLLNIF NNLVHVENPS LEVADHIKLI 0201: CKIFWSCIYL ELPRPLFDPN FFNAWMGLFL NILERPVPVE GQPEDPELRK SWGWWKAKKW IAHILNRLYT RFGDLKLQNP DNKAFAQMFQ INYAAKILEC 0301: HLKLLNAIRI GGYLPDRVIN LILQYLSNSI SKSSMYNLLQ PHLNTLLFEI VFPLMCFNDN DQMLWDEDPH EYVRKGYDII EDLYSPRTAS MDFVTELVRK 0401: RGKENFPKFI QFVVDIFKRY NEASLENKPY RLKDGALLAV GTLCDKLRQT EPYKSELENM LVQHVFPEFS SPAGHLRAKA AWVAGQYANI DFSDQSNFSK 0501: ALHCVISGMC DLELPVRVDS VFALRSFIEA CKDLDEIRPV LPQLLDEFFK LMKEVENEDL AFTLETIVYK FGEEISPYAL GLCQNLASAF WRCIDTDNGD 0601: DETDDAGALA AVGCLRAIST ILESISSLPH LYGQIEPQLL PIMRKMLTTD GQDVFEEVLE IVSYITTFSP TISLEMWSLW PLMMEALVDW AIDFFPNILV 0701: PLHNYISRGT GHYLTCKEPD YQQNLWNVIS VLMANKNIDD SDLEPAPKLL GIVLQTCKGQ VDQWVEPYLR ITLDRLRGAE KSSFKCLLVE VVANAFYYNT 0801: PLALGILQRF GIATEIFTLW FQMLQEKKKS GARSNFKREH DKKVCILGLT SLFSLPAGQL PGEVLPHVFR ALLELLVAYK DQLAAAKAEE EEEDEDGDDD 0901: DMDEFQTDDE DEDGDDENPD ETDGSTLRKL AAQAKDFRSY SDDDDFSDDD FSDDEELESP IDEVDPFVLF MDAVTAMQVS DSPRFQSLTQ TLDPHYHGLA 1001: STIAQHTELR RAEILKEKLE KQSSATVAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)