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AT5G47040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (peroxisomal marker)

GFP-At5g47040 (AA 588-888*)RFP-peroxisomal markeroverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lon protease 2
Curator
Summary (TAIR10)
Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.
Computational
Description (TAIR10)
lon protease 2 (LON2); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into peroxisome matrix, docking, growth, lateral root development; LOCATED IN: organelle lumen, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Regulator of G protein signalling superfamily (InterPro:IPR016137), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 1 (TAIR:AT5G26860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47040-MONOMERBioGrid:19998BRENDA:3.4.21.53EC:3.4.21.-
eggNOG:COG0466eggNOG:KOG2004EMBL:AB013394EMBL:AF033862
EMBL:BT002374EMBL:BT010392EMBL:CP002688EnsemblPlants:AT5G47040
EnsemblPlants:AT5G47040.1entrez:834750Gene3D:3.30.230.10Gene3D:3.40.50.300
GeneID:834750Genevisible:O64948GO:GO:0004176GO:GO:0004252
GO:GO:0005524GO:GO:0005777GO:GO:0005782GO:GO:0006515
GO:GO:0016485GO:GO:0016560GO:GO:0040007GO:GO:0043233
GO:GO:0048527Gramene:AT5G47040.1HAMAP:MF_03121hmmpanther:PTHR10046
hmmpanther:PTHR10046:SF24HOGENOM:HOG000261408InParanoid:O64948InterPro:IPR003111
InterPro:IPR003593InterPro:IPR003959InterPro:IPR004815InterPro:IPR008268
InterPro:IPR008269InterPro:IPR014721InterPro:IPR015947InterPro:IPR020568
InterPro:IPR027065InterPro:IPR027417InterPro:IPR027501iPTMnet:O64948
KEGG:ath:AT5G47040KO:K01338MEROPS:S16.003ncoils:Coil
OMA:VVFPYMMPANTHER:PTHR10046PaxDb:O64948Pfam:O64948
Pfam:PF00004Pfam:PF02190Pfam:PF05362PhylomeDB:O64948
PRIDE:O64948PRO:PR:O64948PROSITE:PS01046PROSITE:PS51786
PROSITE:PS51787ProteinModelPortal:O64948Proteomes:UP000006548RefSeq:NP_568675.1
scanprosite:PS01046SMART:SM00382SMART:SM00464SMR:O64948
STRING:3702.AT5G47040.1SUPFAM:SSF52540SUPFAM:SSF54211SUPFAM:SSF88697
TAIR:AT5G47040tair10-symbols:LON2TIGRfam:TIGR00763TIGRFAMs:TIGR00763
UniGene:At.8585UniProt:O64948
Coordinates (TAIR10) chr5:-:19093356..19098678
Molecular Weight (calculated) 97867.60 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.23
Length 888 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETVELPSR LAILPFRNKV LLPGAIIRIR CTSHSSVTLV EQELWQKEEK GLIGILPVRD DAEGSSIGTM INPGAGSDSG ERSLKFLVGT TDAQKSDAKD
101: QQDLQWHTRG VAARALHLSR GVEKPSGRVT YVVVLEGLSR FNVQELGKRG PYSVARITSL EMTKAELEQV KQDPDFVALS RQFKTTAMEL VSVLEQKQKT
201: GGRTKVLLET VPIHKLADIF VASFEMSFEE QLSMLDSVDL KVRLSKATEL VDRHLQSIRV AEKITQKVEG QLSKSQKEYL LRQQMRAIKE ELGDNDDDED
301: DVAALERKMQ AAGMPSNIWK HAQRELRRLK KMQPQQPGYN SSRVYLELLA DLPWDKASEE HELDLKAAKE RLDSDHYGLA KVKQRIIEYL AVRKLKPDAR
401: GPVLCFVGPP GVGKTSLASS IAAALGRKFV RLSLGGVKDE ADIRGHRRTY IGSMPGRLID GLKRVGVCNP VMLLDEIDKT GSDVRGDPAS ALLEVLDPEQ
501: NKSFNDHYLN VPYDLSKVVF VATANRVQPI PPPLLDRMEL IELPGYTQEE KLKIAMRHLI PRVLDQHGLS SEFLKIPEAM VKNIIQRYTR EAGVRSLERN
601: LAALARAAAV MVAEHEQSLP LSKDVQKLTS PLLNGRMAEG GEVEMEVIPM GVNDHEIGGT FQSPSALVVD ETMLEKILGP PRFDDSEAAD RVASAGVSVG
701: LVWTTFGGEV QFVEATSMVG KGEMHLTGQL GDVIKESAQL ALTWVRARAS DFKLALAGDM NVLDGRDIHI HFPAGAVPKD GPSAGVTLVT ALVSLFSQKR
801: VRADTAMTGE MTLRGLVLPV GGIKDKILAA HRYGIKRVIL PQRNSKDLVE VPAAVLSSLE VILAKRMEDV LENAFEGGCP WRNNYSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)