AT1G09010.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.895 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : glycoside hydrolase family 2 protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
glycoside hydrolase family 2 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 5072 Blast hits to 5044 proteins in 1162 species: Archae - 18; Bacteria - 3983; Metazoa - 234; Fungi - 319; Plants - 43; Viruses - 2; Other Eukaryotes - 473 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:2895259..2899287 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 107666.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 944 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAEIGKTVLD FGWIAARSTE VDVNGVQLTT TNPPAISSES RWMEAAVPGT VLGTLVKNKA IPDPFYGLEN EAITDIADSG RDYYTFWFFT KFQCQRLLNQ 101: YVHLNFRAIN YSAQVFVNGH KTELPKGMFR RHTLDVTDIL HPESNLLALI VHPPDHPGTI PPEGGQGGDH EIGKDVAAQY VQGWDWICPI RDRNTGIWDE 201: VSISVTGPVR IIDPHLVSTF FDDYKRAYLH VTAELENKST WNTECSVNIQ ITAELENGVC LVEHLQTENV LIPAQGRIQH TFKPLYFYKP ELWWPNGMGK 301: QNLYDILITV VVNEFGESDS WMQPFGFRKI ESVIDSVTGG RLFKINGEPI FIRGGNWILS DGLLRLSKER YRTDIKFHAD MNMNMIRCWG GGLAERPEFY 401: HFCDIYGLLV WQEFWITGDV DGRGVPVSNP NGPLDHELFL LCARDTVKLL RNHPSLALWV GGNEQVPPKD INEALKQDLR LHSYFETQLL SDKDSDPSVY 501: LDGTRVYIQG SMWDGFADGK GNFTDGPYEI QYPEDFFKDT YYKYGFNPEV GSVGMPVAET IRATMPPEGW TIPLFKKGLD GFIKEVPNRM WDYHKYIPYS 601: NPGKVHDQIL MYGTPENLDD FCLKAQLVNY IQYRALFEGW SSQMWTKYTG VLIWKNQNPW TGLRGQFYDH LLDQTASFYG CRSAAEPVHV QLNLASYFVE 701: VVNTTSKELS DVAIEASVWD LDGNCPYYKV FKIVSAPPKK VVKISEFKYP KAANPKHVYF LLLKLYTVSD KAVISRNFYW LHLPGKNYTL LEPYRKKQIP 801: LKITCNAVMV GSRYELEVNV HNTSRANLAK NVVQEDEKRD LGLLQKLFSR CVVSADSNRG LKVVEMKGSD SGVAFFLRFS VHNAETEKQD TRILPVHYSD 901: NYFSLVPGES MSFKISFAAP TGMKKSPRVM LQGWNYPDRF SVFG |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)