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AT1G50480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:19288221 (2010): plastid
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 10-formyltetrahydrofolate synthetase
Curator
Summary (TAIR10)
10-formyltetrahydrofolate synthetase (THFS) mRNA, complete
Computational
Description (TAIR10)
10-formyltetrahydrofolate synthetase (THFS); FUNCTIONS IN: formate-tetrahydrofolate ligase activity, copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, folic acid and derivative biosynthetic process; LOCATED IN: apoplast, chloroplast, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Formate-tetrahydrofolate ligase, FTHFS, conserved site (InterPro:IPR020628), Formate-tetrahydrofolate ligase, FTHFS (InterPro:IPR000559); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G12280.1); Has 7211 Blast hits to 7172 proteins in 1581 species: Archae - 30; Bacteria - 3794; Metazoa - 307; Fungi - 186; Plants - 64; Viruses - 0; Other Eukaryotes - 2830 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G50480-MONOMEREC:6.3.4.3eggNOG:COG2759eggNOG:ENOG410IFVW
EMBL:AC012561EMBL:AC079279EMBL:AF162279EMBL:AY054637
EMBL:AY081549EMBL:CP002684EnsemblPlants:AT1G50480EnsemblPlants:AT1G50480.1
entrez:841470Gene3D:3.40.50.300GeneID:841470Genevisible:Q9SPK5
GO:GO:0004329GO:GO:0005507GO:GO:0005524GO:GO:0005829
GO:GO:0005886GO:GO:0009396GO:GO:0009507GO:GO:0009735
GO:GO:0035999GO:GO:0046686GO:GO:0048046Gramene:AT1G50480.1
gramene_pathway:6.3.4.3gramene_pathway:PWY-2161gramene_pathway:PWY-2201gramene_pathway:PWY-3742
gramene_pathway:PWY-3841gramene_plant_reactome:1119523gramene_plant_reactome:1119617gramene_plant_reactome:6874695
gramene_plant_reactome:6875812HAMAP:MF_01543hmmpanther:PTHR10025HOGENOM:HOG000040280
InParanoid:Q9SPK5IntAct:Q9SPK5InterPro:IPR000559InterPro:IPR020628
InterPro:IPR027417iPTMnet:Q9SPK5KEGG:00670+6.3.4.3KEGG:00720+6.3.4.3
KEGG:ath:AT1G50480KO:K01938OMA:IMFRRLTPaxDb:Q9SPK5
Pfam:PF01268Pfam:Q9SPK5PhylomeDB:Q9SPK5PIR:C96541
PRIDE:Q9SPK5PRO:PR:Q9SPK5PROSITE:PS00721PROSITE:PS00722
ProteinModelPortal:Q9SPK5Proteomes:UP000006548Reactome:R-ATH-196757RefSeq:NP_564571.1
scanprosite:PS00721scanprosite:PS00722SMR:Q9SPK5STRING:3702.AT1G50480.1
SUPFAM:SSF52540TAIR:AT1G50480tair10-symbols:THFSUniGene:At.21610
UniGene:At.71081UniPathway:UPA00193UniProt:Q9SPK5World-2DPAGE:0003:Q9SPK5
Coordinates (TAIR10) chr1:+:18702064..18704687
Molecular Weight (calculated) 67805.70 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.04
Length 634 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)