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AT1G03000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peroxin 6
Curator
Summary (TAIR10)
Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.
Computational
Description (TAIR10)
peroxin 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626; Bacteria - 13920; Metazoa - 5344; Fungi - 4031; Plants - 3389; Viruses - 33; Other Eukaryotes - 7693 (source: NCBI BLink).
Protein Annotations
BioGrid:24550eggNOG:ENOG410XNT9eggNOG:KOG0736EMBL:AC006550
EMBL:AY078962EMBL:AY333116EMBL:BT001151EMBL:CP002684
EnsemblPlants:AT1G03000EnsemblPlants:AT1G03000.1entrez:839315Gene3D:3.40.50.300
GeneID:839315Genevisible:Q8RY16GO:GO:0005524GO:GO:0005737
GO:GO:0006635GO:GO:0016558Gramene:AT1G03000.1hmmpanther:PTHR23077
hmmpanther:PTHR23077:SF9HOGENOM:HOG000241031InParanoid:Q8RY16InterPro:IPR003593
InterPro:IPR003959InterPro:IPR003960InterPro:IPR027417KEGG:ath:AT1G03000
KO:K13339OMA:HISCLKSPaxDb:Q8RY16Pfam:PF00004
Pfam:Q8RY16PhylomeDB:Q8RY16PIR:F86160PRIDE:Q8RY16
PRO:PR:Q8RY16PROSITE:PS00674ProteinModelPortal:Q8RY16Proteomes:UP000006548
RefSeq:NP_171799.2scanprosite:PS00674SMART:SM00382SMR:Q8RY16
STRING:3702.AT1G03000.1SUPFAM:SSF52540TAIR:AT1G03000tair10-symbols:PEX6
TCDB:3.A.20.1.2UniGene:At.42567UniProt:Q8RY16
Coordinates (TAIR10) chr1:-:688057..692453
Molecular Weight (calculated) 103051.00 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.20
Length 941 amino acids
Sequence (TAIR10)
(BLAST)
001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)