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AT1G76050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pseudouridine synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: shoot, leaf lamina base, stem, embryo, leaf whorl; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); Has 15192 Blast hits to 15192 proteins in 2580 species: Archae - 12; Bacteria - 11504; Metazoa - 97; Fungi - 82; Plants - 90; Viruses - 0; Other Eukaryotes - 3407 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G76050EnsemblPlants:AT1G76050.1entrez:843937hmmpanther:PTHR11079
hmmpanther:PTHR11079:SF73Pfam:PF00849Pfam:PF01479Pfscan:PS50889
scanprosite:PS01129SUPFAM:SSF55174
Coordinates (TAIR10) chr1:+:28540858..28542019
Molecular Weight (calculated) 33857.20 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.20
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSISQLPSF SLTTAKSLRY PSSPSSSLSI FFSFFPKVSN FVRASSGIPN LVACSPTEII IPRVNNAGLR IEEIVDAAKG KIRLDSWISS RINGVSRARV
101: QSSIRLGLVT VNGRVVDKVS HNVKSGDEVN CTISELQPLK AEAEDIPLDI VYEDKHVLVV NKPAHMVVHP APGNPTGTLV NGILHHCSLP CVDYSNSEED
201: DDSDEETFSD DEEMTTSPSS YAASVRPGIV HRLDKGTTGL LVVAKDEHSH AHLAEQFKLH TIERVYVSLT TGVPSPPQGR IEIPIGRDSS NRIRMAAIPG
301: GVRGGRARHA ASR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)