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AT1G80770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pigment defective 318 (PDE318); FUNCTIONS IN: ferrous iron transmembrane transporter activity, GTP binding; INVOLVED IN: ferrous iron transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), Ferrous iron transport protein B, N-terminal (InterPro:IPR011619); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 11067 Blast hits to 11052 proteins in 2859 species: Archae - 320; Bacteria - 7505; Metazoa - 379; Fungi - 348; Plants - 242; Viruses - 0; Other Eukaryotes - 2273 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1084eggNOG:KOG1490EMBL:AY128318EMBL:BT000030
EMBL:CP002684EnsemblPlants:AT1G80770EnsemblPlants:AT1G80770.1entrez:844416
ExpressionAtlas:Q8L7Q9Gene3D:3.40.50.300GeneID:844416GO:GO:0005525
GO:GO:0015093GO:GO:0016021Gramene:AT1G80770.1hmmpanther:PTHR11702
hmmpanther:PTHR11702:SF28HOGENOM:HOG000030515InterPro:IPR006073InterPro:IPR010674
InterPro:IPR011619InterPro:IPR027417OMA:WIDAVSKPfam:PF02421
Pfam:PF06858PhylomeDB:Q8L7Q9PRINTS:PR00326Proteomes:UP000006548
RefSeq:NP_178192.1SMR:Q8L7Q9STRING:3702.AT1G80770.1SUPFAM:SSF52540
TAIR:AT1G80770tair10-symbols:PDE318UniGene:At.33877UniProt:Q8L7Q9
Coordinates (TAIR10) chr1:+:30355266..30357786
Molecular Weight (calculated) 50416.10 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.35
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLASSLVPH QWRLLTSPQL SLQAFIFSTA STTKSHTFWS PSLRQCRNLQ TALSPIVSSS YLPTSYITQK QIEIPTSPEK QSPPVQEGLG AFQKLPMVMP
101: SIDLYASALR KSKRVQPTKG IANIAKRERN RGAKQLDAFM KELALPLKGY MESFPRKKLL HPYERSLIDL TLGDGKYEEV LGKVDVLRKK VQSVGKEHAS
201: LCAKALSKKE AEERLSEGVE KLELVFQQQG GAVDDLLTIA KVLRAMPVVD LEMPTLCLVG APNVGKSSLV RILSTGKPEI CNYPFTTRGI LMGHIVLNYQ
301: RFQVTDTPGL LRRCDEDRNN LEKLTLAVLT HLPTAVLYVH DLTGECGTSP SDQFQIYKEM KERFKDYLWI DAVSKCDLLG GSPVMYAKED RSSDDAEIIK
401: YRERGPDESI HVSVKTEQGL NELKNKVKEV LSSEMEKIQS GEKTDQSVAT C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)