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AT1G18460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: lipase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AB-hydrolase-associated lipase region (InterPro:IPR006693); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73920.1); Has 1698 Blast hits to 1679 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1170; Fungi - 262; Plants - 165; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G18460-MONOMEReggNOG:COG0596eggNOG:KOG2624EMBL:AY102112
EMBL:BT001089EMBL:CP002684EnsemblPlants:AT1G18460EnsemblPlants:AT1G18460.1
entrez:838426ESTHER:arath-Q8LPF5Gene3D:3.40.50.1820GeneID:838426
GO:GO:0006629GO:GO:0016021GO:GO:0016787Gramene:AT1G18460.1
hmmpanther:PTHR11005hmmpanther:PTHR11005:SF17HOGENOM:HOG000029636InterPro:IPR006693
InterPro:IPR029058KEGG:ath:AT1G18460MEROPS:S33.A68OMA:NYESHWT
Pfam:PF04083PhylomeDB:Q8LPF5Proteomes:UP000006548RefSeq:NP_173281.1
SMR:Q8LPF5STRING:3702.AT1G18460.1SUPFAM:SSF53474TAIR:AT1G18460
TMHMM:TMhelixUniGene:At.27535UniProt:Q8LPF5
Coordinates (TAIR10) chr1:+:6352682..6355971
Molecular Weight (calculated) 79433.20 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.24
Length 701 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRIVDNALA ITKESVKTLT YESLNNIARC INGFSALLLT LLPGKSNVLE GLHGWELRPT LRGPRLPRWM HNGVSSFNHF IHELSVDSDT SSLDYSSGDD
101: DSDGMSTPPS PLSQSSLRSW ASLPANYESH WTDWITFIVW WALLPARILL WVPLYLLRLL ARRNSRMQPL SPGRYQHSSR PCFSKAISGK EHDVPNRTTD
201: KRRGVIEDLQ LGIEIFIETI FDFFHKAAHL LLSPSETFGI VLSWFSSSSH SSKGNYGDVS DDEIIQTAIL GDNDSSLTER RTTTSLYNTD TRTCQDVITE
301: LGYPYEAIRV VTSDGYGLLL ERIPRRDARK AVYLQHGVMD SSMGWVSNGV VGSPAFAAYD QGYDVFLGNF RGLVSRDHVK KNISSKDFWR YSINEHATED
401: IPAMIEKIHE IKTSELKLYQ PTMEEVVNED QPYKLCVVSH SLGGAAVLMY VITRKIEEKP HRLSRLILLS PAGFHYDSNM CFTLMEYTFL FLGPVLSRIV
501: PAFYIPTKFF RMLLNKLARD FHNYPAVGGL VQTLMSYVVG GDSSNWVGVM GLPHYNMNDM PGISFRVAQH LAQIKHSGKF KMFDYGSSSA NMDVYGSPEP
601: LDLGEFYGLI DVPVDLVAGK KDKVIRPSMV RKHYRVMRDS GVDVSYNEFE YAHLDFTFSH REELLAYVMS RLLLVEPTQT QTVHKKGMKL KKKMETGKPH
701: L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)