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AT5G47390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb-like transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G16350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGYTeggNOG:ENOG4111IMAEMBL:AB018117EMBL:AK226931
EMBL:AY072077EMBL:AY084295EMBL:AY096661EMBL:AY519516
EMBL:CP002688EnsemblPlants:AT5G47390EnsemblPlants:AT5G47390.1entrez:834786
Gene3D:1.10.10.60GeneID:834786GO:GO:0000122GO:GO:0000976
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0008270GO:GO:0009651GO:GO:0009723GO:GO:0009737
GO:GO:0009739GO:GO:0009751GO:GO:0009753GO:GO:0030307
GO:GO:0046686GO:GO:0048366GO:GO:2000469Gramene:AT5G47390.1
hmmpanther:PTHR24078hmmpanther:PTHR24078:SF280HOGENOM:HOG000237594InterPro:IPR001005
InterPro:IPR001878InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT5G47390OMA:PIWPAGYPfam:PF00249Pfscan:PS50158
Pfscan:PS51294PhylomeDB:Q9LVS0PROSITE:PS50158PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_199550.1SMART:SM00717SMR:Q9LVS0
STRING:3702.AT5G47390.1SUPFAM:SSF46689TAIR:AT5G47390TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.23392UniProt:Q9LVS0
Coordinates (TAIR10) chr5:+:19227001..19228546
Molecular Weight (calculated) 39673.00 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.71
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRRCSHCNH NGHNSRTCPN RGVKLFGVRL TEGSIRKSAS MGNLSHYTGS GSGGHGTGSN TPGSPGDVPD HVAGDGYASE DFVAGSSSSR ERKKGTPWTE
101: EEHRMFLLGL QKLGKGDWRG ISRNYVTTRT PTQVASHAQK YFIRQSNVSR RKRRSSLFDM VPDEVGDIPM DLQEPEEDNI PVETEMQGAD SIHQTLAPSS
201: LHAPSILEIE ECESMDSTNS TTGEPTATAA AASSSSRLEE TTQLQSQLQP QPQLPGSFPI LYPTYFSPYY PFPFPIWPAG YVPEPPKKEE THEILRPTAV
301: HSKAPINVDE LLGMSKLSLA ESNKHGESDQ SLSLKLGGGS SSRQSAFHPN PSSDSSDIKS VIHAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)