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AT5G19390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.952
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rho GTPase activation protein (RhoGAP) with PH domain
Curator
Summary (TAIR10)
Encodes a protein with similarity to REN1, a Rho GTPase activating protein.
Computational
Description (TAIR10)
Rho GTPase activation protein (RhoGAP) with PH domain; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: Rho GTPase activation protein (RhoGAP) with PH domain (TAIR:AT5G12150.1); Has 4617 Blast hits to 4464 proteins in 264 species: Archae - 6; Bacteria - 65; Metazoa - 3342; Fungi - 447; Plants - 223; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR4EeggNOG:KOG4271EMBL:AF296837EMBL:AK316947
EMBL:AK317427EMBL:AY091776EMBL:BT002224EMBL:CP002688
EnsemblPlants:AT5G19390EnsemblPlants:AT5G19390.1EnsemblPlants:AT5G19390.2entrez:832059
ExpressionAtlas:Q8RWQ4Gene3D:1.10.555.10Gene3D:2.30.29.30GeneID:832059
GO:GO:0005096GO:GO:0007165GO:GO:0009535GO:GO:0043547
hmmpanther:PTHR23176hmmpanther:PTHR23176:SF44HOGENOM:HOG000064624InParanoid:Q8RWQ4
InterPro:IPR000198InterPro:IPR001849InterPro:IPR008936InterPro:IPR011993
InterPro:IPR025757iPTMnet:Q8RWQ4ncoils:CoilOMA:SHENRMN
PaxDb:Q8RWQ4Pfam:PF00169Pfam:PF00620Pfam:PF14389
Pfam:Q8RWQ4Pfscan:PS50003Pfscan:PS50238PhylomeDB:Q8RWQ4
PRIDE:Q8RWQ4PRO:PR:Q8RWQ4PROSITE:PS50003PROSITE:PS50238
ProteinModelPortal:Q8RWQ4Proteomes:UP000006548RefSeq:NP_001031905.1RefSeq:NP_197440.2
RefSeq:NP_851042.2SMART:SM00233SMART:SM00324SMR:Q8RWQ4
STRING:3702.AT5G19390.1SUPFAM:SSF48350SUPFAM:SSF50729TAIR:AT5G19390
UniGene:At.31298UniProt:Q8RWQ4
Coordinates (TAIR10) chr5:+:6531906..6538206
Molecular Weight (calculated) 96132.80 Da
IEP (calculated) 5.25
GRAVY (calculated) -0.66
Length 870 amino acids
Sequence (TAIR10)
(BLAST)
001: MEASLAALER PRGSASNTVF KSGPLFISSK GLGWTSWKKR WFILTRTSLV FFKNDPGTLP QKGGEVNLTL GGIDLNNSGS VVVREDKKLL TVLFPDGRDG
101: RAFTLKAETF EDLYEWKTAL EQALAQAPNA ALIMGQNGIF RAETNEAIEG REKRPLKSLV VGRPILLALE DIDGSPSFLE KALQFIEKYG TKIEGILRQS
201: ADVEEVERRV QEYEQGKTEF TFDEDPHVVG DCIKHVLREL PSSPVSASCC TALLEAYRIE SKEARISSLR SAIAETFPEP NRRLLQRILK MMHTISSHSH
301: ENRMNPNAVA ACMAPLLLRP LLAGECDLED DFDGGEDNSA QLLAAANAAN NAQAIITVLL EDYGSIFDEE NIQRCSISTE SHIGNSGPDD SSDDDNNMKN
401: GYHNADNEVE PVTDDDNDRA LSGKMSESSG CTGSDLYEYK GFVADDSDIE SPRDTNGPRC NSNIRTDHLM RNPFVNSTDQ QAGEQIGDDP TKYGVNSCLA
501: HVSESYQQSG TGLNVPTHGN TLAAPGLESP SAKSVNKGTP SSVHAKRATF WGRGSARKIS TDGSFDSSGE DELAIQRLET TKNELRQRIA KEARGNAILQ
601: ASLERRKQAL HERRLSLEQD VSRLQEQLQA ERDLRAALEV GLSMSSGQFS SHGVDSKTRA ELEEIALAEA DVARLKQKVA ELHHQLNQQR QTHFGSFSDA
701: RDTHQYLQNH NPQKRFLQQD FDSTLAYVNH ERKQRHEENV LGAEWRNSKG AGSFGVGNSR QPSRKQIPES TNTTDSKISE ESGKISVDKL SSIDSPSIPS
801: TSRVLDITEY PRLNHPSAAA SAALVELTTR LDFFKERRSQ LMEQLQNLDL NYGGSSSQDF IHRPSSPPWN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)